commit: e4d2f4aa20dd3df7e3fa7b34da4f5c597b506830 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sat Feb 25 20:56:17 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Feb 25 20:56:27 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e4d2f4aa
sci-chemistry/pymol: Drop old Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-chemistry/pymol/Manifest | 4 -- sci-chemistry/pymol/pymol-1.7.6.0.ebuild | 110 ------------------------------- sci-chemistry/pymol/pymol-1.7.7.2.ebuild | 110 ------------------------------- sci-chemistry/pymol/pymol-1.8.2.1.ebuild | 109 ------------------------------ 4 files changed, 333 deletions(-) diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest index d7e893dc07..1f72685ea0 100644 --- a/sci-chemistry/pymol/Manifest +++ b/sci-chemistry/pymol/Manifest @@ -1,6 +1,2 @@ -DIST pymol-1.7.0.0.png.xz 5392 SHA256 4c554a5c4f47946b6f7bae00209d5116305162534292735d30ae0794c56a8a0b SHA512 24bb1584b28688f5d5824e938f8500ca9887838adf490b4284c52f8c0da4c5ec4a56051ee80f48e4f34541ab53f9a4e00c849c382f1fd37c232fbea12d700105 WHIRLPOOL 395f978eb9ea3a8f8f39bf0694f71986ac9f8ebb307b90283c53fed85c4412d84e54af472f8646fcbd99c650039cb395a8f02b281168802c73ddb9bad175512b -DIST pymol-1.7.6.0.tar.xz 6510380 SHA256 31d4924378b38b65fae5b294e0755ee15916f9e845ef2efe5e2421f463bf3b91 SHA512 ff8c37de07e0ed8dc1176224eea439109f2bd5e42b5c08316f5737a2fdcf5a1f267b625c166fa740296c20ef089873ae1ad6cb89b11111e9d3aeda0b6035d55d WHIRLPOOL 3582cc846695ca580a4bcd31db8079f32d3cb0d84b8fa1afeb0b210d7004642bf58eab42cafd552f360a5e20b546e554cf5420b7dd2e8cefa5b956a9453215e2 -DIST pymol-1.7.7.2.tar.xz 6527780 SHA256 fc15fc8fbf23b422c5d19babd20e19b7d7ab8ee9532012c7b3a27b87af44fdae SHA512 faf3715cd6b9e7115f6501fc4480a6f71fe53d3b02b2eeefdd07a57d7c15b3621c05fd3894bb92ac4042edaa224d99c2be7488a762254d069c581974a0146179 WHIRLPOOL b52683ce1dc265fe302c974ccc1bfa9e55365e8502f944cf6527c0071f207fcb54e8b3ad38fd684b66c66f85fa6a03f2f1178b90fd406b9f7561d956c704fb9a DIST pymol-1.8.4.0.png.xz 19528 SHA256 e2c956b39965130a3dc51c2c1b1090bee6bf591885069b2ddb77c0991e9e4928 SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c WHIRLPOOL 1336c20e068b71cdf35118c84b5df8485c86bc51eed7f542a483fb78ce374ca76e4aed3518aced0a6f8ea49e0b180004e567cc059ac52a27a3d616adb282cea2 -DIST pymol-v1.8.2.1.tar.bz2 8694029 SHA256 fc5d33d7e36364567462cee19b9b132530a83cbab3fafcf373f2a17f127b3f4e SHA512 c6768ab75f715e48fbaa3d0c0664f717b05212c6d004cacea0e9a79ead98375ae7773b4a5c4c476a3b3731be910e3df585b2980fd97fd3fb2afb5ec91304adce WHIRLPOOL 4ad164a3629e15df12ce75a769e34b1af2f87f68f88988919c0d0e8d80fe4062283102003d222040b9a8f0bd91e756eac494e67477242b48cd04947d34cb7c48 DIST pymol-v1.8.4.0.tar.bz2 8717344 SHA256 b6147befe74844dd23550461b831b2fa6d170d4456f0059cf93fb1e8cb43d279 SHA512 73a810adfc31adaf0f3fa25512084882c87b0782c8af716ac0203a5b5b7f0b9fedfbce3d129bffef7b52044e92b0542e683966b2acf961c4dac17fbba72dd7fe WHIRLPOOL 3943a619ca00cc2bfb51ff4dffa0166856b4425c7518d91b1ff2a048caa53dcb7411c64b246014b860b7f036de582e9efdc09783b3918283f0a96ee5130c7287 diff --git a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild b/sci-chemistry/pymol/pymol-1.7.6.0.ebuild deleted file mode 100644 index 4033493c22..0000000000 --- a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild +++ /dev/null @@ -1,110 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils fdo-mime flag-o-matic versionator - -DESCRIPTION="A Python-extensible molecular graphics system" -HOMEPAGE="http://www.pymol.org/"; -SRC_URI=" - https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz - https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz -" -# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 -# git archive -v --prefix=${P}/ master -o ${P}.tar.xz - -LICENSE="PSF-2.2" -SLOT="0" -KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" -IUSE="web" - -DEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pyopengl[${PYTHON_USEDEP}] - media-libs/freeglut - media-libs/freetype:2 - media-libs/glew:0= - media-libs/libpng:0= - media-video/mpeg-tools - sys-libs/zlib - virtual/python-pmw[${PYTHON_USEDEP}] - !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] - web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/${P}/${PN} - -python_prepare_all() { - sed \ - -e "s:\"/usr:\"${EPREFIX}/usr:g" \ - -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ - -e "/import/s:argparse:argparseX:g" \ - -i setup.py || die - - sed \ - -e "s:/opt/local:${EPREFIX}/usr:g" \ - -e '/ext_comp_args/s:\[.*\]:[]:g' \ - -i setup.py || die - - append-cxxflags -std=c++0x - - distutils-r1_python_prepare_all -} - -python_install() { - distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" - - sed \ - -e '1d' \ - -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ - -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ - -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ - -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die -} - -python_install_all() { - distutils-r1_python_install_all - - sed \ - -e '1i#!/usr/bin/env python' \ - "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die - - python_foreach_impl python_doscript "${T}"/${PN} - - # These environment variables should not go in the wrapper script, or else - # it will be impossible to use the PyMOL libraries from Python. - cat >> "${T}"/20pymol <<- EOF - PYMOL_PATH="${EPREFIX}/usr/share/pymol" - PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" - PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" - EOF - - doenvd "${T}"/20pymol - - newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png - make_desktop_entry ${PN} PyMol ${PN} \ - "Graphics;Education;Science;Chemistry;" \ - "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" - - if ! use web; then - rm -rf "${D}/$(python_get_sitedir)/web" || die - fi - - rm -f "${ED}"/usr/share/${PN}/LICENSE || die -} - -pkg_postinst() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update - optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr -} - -pkg_postrm() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update -} diff --git a/sci-chemistry/pymol/pymol-1.7.7.2.ebuild b/sci-chemistry/pymol/pymol-1.7.7.2.ebuild deleted file mode 100644 index 7d6aab4313..0000000000 --- a/sci-chemistry/pymol/pymol-1.7.7.2.ebuild +++ /dev/null @@ -1,110 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils fdo-mime flag-o-matic versionator - -DESCRIPTION="A Python-extensible molecular graphics system" -HOMEPAGE="http://www.pymol.org/"; -SRC_URI=" - https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz - https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz -" -# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 -# git archive -v --prefix=${P}/ master -o ${P}.tar.xz - -LICENSE="PSF-2.2" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" -IUSE="web" - -DEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pyopengl[${PYTHON_USEDEP}] - media-libs/freeglut - media-libs/freetype:2 - media-libs/glew:0= - media-libs/libpng:0= - media-video/mpeg-tools - sys-libs/zlib - virtual/python-pmw[${PYTHON_USEDEP}] - !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] - web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/${P}/${PN} - -python_prepare_all() { - sed \ - -e "s:\"/usr:\"${EPREFIX}/usr:g" \ - -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ - -e "/import/s:argparse:argparseX:g" \ - -i setup.py || die - - sed \ - -e "s:/opt/local:${EPREFIX}/usr:g" \ - -e '/ext_comp_args/s:\[.*\]:[]:g' \ - -i setup.py || die - - append-cxxflags -std=c++0x - - distutils-r1_python_prepare_all -} - -python_install() { - distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" - - sed \ - -e '1d' \ - -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ - -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ - -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ - -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die -} - -python_install_all() { - distutils-r1_python_install_all - - sed \ - -e '1i#!/usr/bin/env python' \ - "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die - - python_foreach_impl python_doscript "${T}"/${PN} - - # These environment variables should not go in the wrapper script, or else - # it will be impossible to use the PyMOL libraries from Python. - cat >> "${T}"/20pymol <<- EOF - PYMOL_PATH="${EPREFIX}/usr/share/pymol" - PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" - PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" - EOF - - doenvd "${T}"/20pymol - - newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png - make_desktop_entry ${PN} PyMol ${PN} \ - "Graphics;Education;Science;Chemistry;" \ - "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" - - if ! use web; then - rm -rf "${D}/$(python_get_sitedir)/web" || die - fi - - rm -f "${ED}"/usr/share/${PN}/LICENSE || die -} - -pkg_postinst() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update - optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr -} - -pkg_postrm() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update -} diff --git a/sci-chemistry/pymol/pymol-1.8.2.1.ebuild b/sci-chemistry/pymol/pymol-1.8.2.1.ebuild deleted file mode 100644 index e86a042c8d..0000000000 --- a/sci-chemistry/pymol/pymol-1.8.2.1.ebuild +++ /dev/null @@ -1,109 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit distutils-r1 eutils fdo-mime flag-o-matic versionator - -DESCRIPTION="A Python-extensible molecular graphics system" -HOMEPAGE="http://www.pymol.org/"; -SRC_URI=" - https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz - mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 - " -# git archive -v --prefix=${P}/ master -o ${P}.tar.xz -RESTRICT="mirror" -LICENSE="PSF-2.2" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" -IUSE="web" - -DEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pyopengl[${PYTHON_USEDEP}] - media-libs/freeglut - media-libs/freetype:2 - media-libs/glew:0= - media-libs/libpng:0= - media-video/mpeg-tools - sys-libs/zlib - virtual/python-pmw[${PYTHON_USEDEP}] - !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] - web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/${PN} - -python_prepare_all() { - sed \ - -e "s:\"/usr:\"${EPREFIX}/usr:g" \ - -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ - -e "/import/s:argparse:argparseX:g" \ - -i setup.py || die - - sed \ - -e "s:/opt/local:${EPREFIX}/usr:g" \ - -e '/ext_comp_args/s:\[.*\]:[]:g' \ - -i setup.py || die - - append-cxxflags -std=c++0x - - distutils-r1_python_prepare_all -} - -python_install() { - distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" - - sed \ - -e '1d' \ - -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ - -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ - -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ - -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die -} - -python_install_all() { - distutils-r1_python_install_all - - sed \ - -e '1i#!/usr/bin/env python' \ - "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die - - python_foreach_impl python_doscript "${T}"/${PN} - - # These environment variables should not go in the wrapper script, or else - # it will be impossible to use the PyMOL libraries from Python. - cat >> "${T}"/20pymol <<- EOF - PYMOL_PATH="${EPREFIX}/usr/share/pymol" - PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" - PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" - EOF - - doenvd "${T}"/20pymol - - newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png - make_desktop_entry ${PN} PyMol ${PN} \ - "Graphics;Education;Science;Chemistry;" \ - "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" - - if ! use web; then - rm -rf "${D}/$(python_get_sitedir)/web" || die - fi - - rm -f "${ED}"/usr/share/${PN}/LICENSE || die -} - -pkg_postinst() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update - optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr -} - -pkg_postrm() { - fdo-mime_desktop_database_update - fdo-mime_mime_database_update -}
