commit: b65cb3eec74d50842909ac65d6e0d156e1a4e910
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 3 07:06:25 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 3 07:06:25 2014 +0000
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b65cb3ee
Moved to tree
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
---
sci-biology/biopython/ChangeLog | 10 -----
sci-biology/biopython/biopython-1.63-r2.ebuild | 54 --------------------------
sci-biology/biopython/biopython-1.64.ebuild | 54 --------------------------
sci-biology/biopython/metadata.xml | 5 ---
4 files changed, 123 deletions(-)
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
deleted file mode 100644
index c60a939..0000000
--- a/sci-biology/biopython/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/biopython
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*biopython-1.63-r2 (03 Jun 2014)
-*biopython-1.64 (03 Jun 2014)
-
- 03 Jun 2014; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
- +biopython-1.63-r2.ebuild, +biopython-1.64.ebuild, +metadata.xml:
- sci-biology/biopython-1.64: version bump with some notable bugfixes
diff --git a/sci-biology/biopython/biopython-1.63-r2.ebuild
b/sci-biology/biopython/biopython-1.63-r2.ebuild
deleted file mode 100644
index 435c757..0000000
--- a/sci-biology/biopython/biopython-1.63-r2.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header:
/var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1
2013/09/17 16:07:56 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-inherit distutils-r1 eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/";
-SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz";
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="mysql postgres"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/rdflib[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/reportlab[${PYTHON_USEDEP}]
- media-gfx/pydot[${PYTHON_USEDEP}]
- mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
- postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
-
-src_prepare() {
- epatch "${FILESDIR}/SffIO_error_in_check_eof.patch"
- epatch "${FILESDIR}/SffIO_broken_padding.patch"
- epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch"
- distutils-r1_src_prepare
-}
-
-python_test() {
- cd Tests || die
- ${PYTHON} run_tests.py || die
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- dodir /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
diff --git a/sci-biology/biopython/biopython-1.64.ebuild
b/sci-biology/biopython/biopython-1.64.ebuild
deleted file mode 100644
index 366fa7a..0000000
--- a/sci-biology/biopython/biopython-1.64.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header:
/var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1
2013/09/17 16:07:56 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-inherit distutils-r1 eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/";
-SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz";
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="mysql postgres"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/rdflib[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/reportlab[${PYTHON_USEDEP}]
- media-gfx/pydot[${PYTHON_USEDEP}]
- mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
- postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
-
-#src_prepare() {
-# epatch "${FILESDIR}/SffIO_error_in_check_eof.patch"
-# epatch "${FILESDIR}/SffIO_broken_padding.patch"
-# epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch"
-# distutils-r1_src_prepare
-#}
-
-python_test() {
- cd Tests || die
- ${PYTHON} run_tests.py || die
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- dodir /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
diff --git a/sci-biology/biopython/metadata.xml
b/sci-biology/biopython/metadata.xml
deleted file mode 100644
index f17a827..0000000
--- a/sci-biology/biopython/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <herd>sci-biology</herd>
-</pkgmetadata>
