[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/, sci-biology/ncbi-tools++/files/

[Martin Mokrejs]

commit:     8a773e1d1d08a4fed7fdbf65003f7a9b6f67abb4
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 24 22:49:31 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 24 22:49:31 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8a773e1d

sci-biology/ncbi-tools++: add another patch (with an incomplete fix)

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 .../files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch      | 13 +++++++++++++
 sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild         |  1 +
 2 files changed, 14 insertions(+)

diff --git 
a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch 
b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
new file mode 100644
index 000000000..0724fa2cf
--- /dev/null
+++ 
b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
@@ -0,0 +1,13 @@
+--- ncbi_cxx--18_0_0/src/app/srcchk/Makefile.srcchk.app.ori    2017-03-24 
04:08:42.723928634 +0100
++++ ncbi_cxx--18_0_0/src/app/srcchk/Makefile.srcchk.app        2017-03-24 
04:10:00.687004260 +0100
+@@ -8,8 +8,8 @@
+ 
+ APP = srcchk
+ SRC = srcchk
+-LIB = xobjwrite variation_utils $(OBJREAD_LIBS) xalnmgr xobjutil \
+-      gbseq entrez2cli entrez2 tables $(OBJMGR_LIBS)
++LIB = xobjwrite $(XFORMAT_LIBS) variation_utils $(OBJREAD_LIBS) xalnmgr \
++      xobjutil entrez2cli entrez2 tables $(OBJMGR_LIBS)
+ 
+ LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+ 

diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild 
b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 3f3f4efc6..f3bf993b0 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -126,6 +126,7 @@ src_prepare() {
                "${FILESDIR}"/${P}-fix-netstorage_gc-linking.patch
                "${FILESDIR}"/${P}-fix-speedtest-linking.patch
                "${FILESDIR}"/${P}-fix-splign-linking.patch
+               "${FILESDIR}"/${P}-fix-srcchk-linking.patch
                )
        #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
        epatch ${PATCHES[@]}