commit: b0f5d1f1974db03f189da3df7aa6d64532f4949d Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Mar 26 22:48:16 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Mar 26 22:48:16 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b0f5d1f1
sci-biology/ncbi-tools++: fix table2asn linking Package-Manager: Portage-2.3.5, Repoman-2.3.1 .../ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch | 13 +++++++++++++ sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 1 + 2 files changed, 14 insertions(+) diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch new file mode 100644 index 000000000..222cb2c06 --- /dev/null +++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-app-table2asn-linking.patch @@ -0,0 +1,13 @@ +--- ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app.ori 2017-03-27 00:41:58.742206850 +0200 ++++ ncbi_cxx--18_0_0/src/app/table2asn/Makefile.table2asn.app 2017-03-27 00:43:13.142206236 +0200 +@@ -12,8 +12,8 @@ + + LIB = xdiscrepancy xalgophytree fastme prosplign xalgoalignutil xalgoseq xmlwrapp \ + xvalidate xobjwrite xobjreadex valerr biotree macro \ +- $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) id2cli \ +- xregexp $(PCRE_LIB) $(SRAREAD_LIBS) $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS) ++ $(OBJEDIT_LIBS) $(XFORMAT_LIBS) $(BLAST_LIBS) taxon1 id2cli \ ++ xregexp $(PCRE_LIB) xqueryparse $(DATA_LOADERS_UTIL_LIB) $(OBJMGR_LIBS) + + LIBS = $(LIBXSLT_LIBS) $(DATA_LOADERS_UTIL_LIBS) $(LIBXML_LIBS) $(CMPRS_LIBS) $(PCRE_LIBS) \ + $(SRA_SDK_SYSLIBS) \ diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild index 02426ab42..40db6cfa3 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild @@ -129,6 +129,7 @@ src_prepare() { "${FILESDIR}"/${P}-fix-srcchk-linking.patch "${FILESDIR}"/${P}-fix-app-rmblastn-linking.patch "${FILESDIR}"/${P}-remove-old-symlinks.patch + "${FILESDIR}"/${P}-fix-app-table2asn-linking.patch ) #ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch epatch ${PATCHES[@]}