commit: 6b672731c97e773142cbc7ee9a5a09cf2c4c5d60 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Apr 14 07:42:19 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Apr 22 16:09:51 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6b672731
sci-biology/velvet: expose additional variables as described in manual and needed at compile time Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/velvet/velvet-1.2.10.ebuild | 13 +++++++++---- 1 file changed, 9 insertions(+), 4 deletions(-) diff --git a/sci-biology/velvet/velvet-1.2.10.ebuild b/sci-biology/velvet/velvet-1.2.10.ebuild index c6c841be3e4..53f5dd644f9 100644 --- a/sci-biology/velvet/velvet-1.2.10.ebuild +++ b/sci-biology/velvet/velvet-1.2.10.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -28,9 +28,11 @@ src_prepare() { fi elog "Upstream recommendes using -O3 in CFLAGS" echo - elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual," - elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your" - elog "environment or /etc/make.conf, then re-emerge the package. For example:" + elog "To adjust the MAXKMERLENGTH, CATEGORIES, BIGASSEMBLY, LONGSEQUENCES parameters" + elog "as described in the PDF manual, please set the variables by prepending VELVET_ in" + elog "front of it. For example VELVET_MAXKMERLENGTH, VELVET_CATEGORIES, ..." + elog "Set them either in your environment or in /etc/portage/make.conf, then re-emerge" + elog "the package. For example:" elog " VELVET_MAXKMERLENGTH=NN emerge [options] velvet" MAKEOPTS+=" -j1" @@ -51,8 +53,11 @@ src_prepare() { CFLAGS="${CFLAGS}" OPT="${CFLAGS}" ) + if use openmp; then MAKE_XOPTS+=( OPENMP=1 ); fi if [[ ${VELVET_MAXKMERLENGTH} != "" ]]; then MAKE_XOPTS+=( MAXKMERLENGTH=${VELVET_MAXKMERLENGTH} ); fi if [[ ${VELVET_CATEGORIES} != "" ]]; then MAKE_XOPTS+=( CATEGORIES=${VELVET_CATEGORIES} ); fi + if [[ ${VELVET_BIGASSEMBLY} != "" ]]; then MAKE_XOPTS+=( BIGASSEMBLY=${VELVET_BIGASSEMBLY} ); fi + if [[ ${VELVET_LONGSEQUENCES} != "" ]]; then MAKE_XOPTS+=( LONGSEQUENCES=${VELVET_LONGSEQUENCES} ); fi } src_compile() {
