commit: 4b6dbfc8fecf27837182a473fb5635df3ba977e6
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 11 19:29:09 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jul 11 19:30:21 2017 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b6dbfc8
dev-lang/R: Drop version failing with only zlib in tree
Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
dev-lang/R/Manifest | 1 -
dev-lang/R/R-3.3.1.ebuild | 200 ----------------------------------------------
2 files changed, 201 deletions(-)
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 9403f0b02c9..075c16f710d 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,6 +1,5 @@
DIST R-20130129.bash_completion.bz2 4209 SHA256
487e969b94563fec98ec58de7e6142e9361d4219088add0fca282b482a9e01b1 SHA512
910b26e16cfebe677f438abfa5f2652e582db143d91dbf0e7d4b1ea33462c7e5c89c3a3619c63ae98bba26b11a5adb16eda9d344f8cdbe4f0feabc546993c1a5
WHIRLPOOL
2368efaed37fcb6e010f6a234864631f68549bd8e3f733561170cc5b28f5557e546d8561246fb265a481a47991a262fec3acf6abc1dc3929a9357405e0d3c6fc
DIST R-3.2.2.tar.gz 29772864 SHA256
9c9152e74134b68b0f3a1c7083764adc1cb56fd8336bec003fd0ca550cd2461d SHA512
71ba470875262b9f00fb6970f209788df4dad30e0a28373b824b60d8bc6401afb7786e65387663c6490c7ddcd2bfd7f808a270a3e63238f3d7565d5f93607138
WHIRLPOOL
fea59929ada1d67dafc6ad89409d18ad173af7990384033f490a00e0f794d9919aecf7cd37089d105fe03b9cf64d079e5d148622571cec3eb924c1c5bd00081e
-DIST R-3.3.1.tar.gz 29848329 SHA256
3dc59ae5831f5380f83c169bac2103ad052efe0ecec4ffa74bde4d85a0fda9e2 SHA512
d0ff85e99b9ec9cac672aa30d7d1a854778c6a610bcc5336e8c60c8c74f20856f2bfeae085af793fad646ff45cb4677d9d6dcbaa18212591f72f00a02339f4cd
WHIRLPOOL
6e2edb60173a54c8b25d16201c24176b3ea837287e6d306c9d2e2c4578764b0d469d9c17228b6be67dda646a4272f30b331dbbc6238a6e851eb5320f04c7f151
DIST R-3.3.2.tar.gz 29440670 SHA256
d294ad21e9f574fb4828ebb3a94b8cb34f4f304a41687a994be00dd41a4e514c SHA512
06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482
WHIRLPOOL
a68112df87552cc6ca8cd6b78b99dda2a22b8f4cfcd87a4512d541d25ef21358ede1ba71b4d7e9f274bf4e4340de18355a777d9af2ed41c0a498fa11d91cf0d8
DIST R-3.4.1.tar.gz 30200109 SHA256
02b1135d15ea969a3582caeb95594a05e830a6debcdb5b85ed2d5836a6a3fc78 SHA512
19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651
WHIRLPOOL
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DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 SHA256
7e452a23e0bd96b1076280448d130adab229b8ea37cd4531db77391868a31e97 SHA512
9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
WHIRLPOOL
49fd55e6a52d55f0aa15d3a117394793b6fba6f1b69a26911a2b2d7c40a65c8ec2246851edc3abb52849930c48e817ee62319ae8bc1db0a9b802c95fcb1554e0
diff --git a/dev-lang/R/R-3.3.1.ebuild b/dev-lang/R/R-3.3.1.ebuild
deleted file mode 100644
index 05155cdb3ca..00000000000
--- a/dev-lang/R/R-3.3.1.ebuild
+++ /dev/null
@@ -1,200 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib
versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/";
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2";
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux
~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix
profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || (
cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin
app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected
gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e
"s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':"
\
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac ||
die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name
${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name
libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name
libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name
${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags
-Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x
/usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
