commit: c7d12eab1de43f052d778980e5d6b8bc016d9141 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sat Sep 2 12:45:45 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sat Sep 2 12:45:45 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c7d12eab
sci-biology/bcftools: Remove old sci-biology/bcftools/bcftools-1.3.1.ebuild | 29 ----------------------------- sci-biology/bcftools/bcftools-1.4.ebuild | 29 ----------------------------- sci-biology/bcftools/bcftools-1.5.ebuild | 29 ----------------------------- sci-biology/bcftools/metadata.xml | 15 --------------- 4 files changed, 102 deletions(-) diff --git a/sci-biology/bcftools/bcftools-1.3.1.ebuild b/sci-biology/bcftools/bcftools-1.3.1.ebuild deleted file mode 100644 index b194609b6..000000000 --- a/sci-biology/bcftools/bcftools-1.3.1.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org"; -SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die - - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die -} diff --git a/sci-biology/bcftools/bcftools-1.4.ebuild b/sci-biology/bcftools/bcftools-1.4.ebuild deleted file mode 100644 index b194609b6..000000000 --- a/sci-biology/bcftools/bcftools-1.4.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org"; -SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die - - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die -} diff --git a/sci-biology/bcftools/bcftools-1.5.ebuild b/sci-biology/bcftools/bcftools-1.5.ebuild deleted file mode 100644 index b194609b6..000000000 --- a/sci-biology/bcftools/bcftools-1.5.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org"; -SRC_URI="https://github.com/samtools/bcftools/releases/download/"${PV}"/"${P}".tar.bz2"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# compiles bundled sci-libs/htslib-"${PV}" as a static library and links it into binaries -DEPEND="dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = ${CFLAGS}@" -i Makefile || die - - sed -e "s@gcc@$(tc-getCC)@" \ - -e 's#prefix = /usr/local#prefix = "${EPREFIX}"/usr#' \ - -e "s@CFLAGS = -g -Wall -O2@#CFLAGS = ${CFLAGS}@" -i htslib-*/Makefile || die -} diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml deleted file mode 100644 index d65c87aa3..000000000 --- a/sci-biology/bcftools/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version='1.0' encoding='UTF-8'?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">samtools/bcftools</remote-id> - </upstream> -</pkgmetadata>
