commit: 9603d74481a45d22eed254faabb63248525b45d5
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Nov 18 17:51:16 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Nov 18 17:51:16 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9603d744
sci-chemistry/specView: Dropped due to missing dependency
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/specView/files/specView | 9 ---
sci-chemistry/specView/metadata.xml | 8 ---
sci-chemistry/specView/specView-1.0.2.ebuild | 87 ------------------------
sci-chemistry/specView/specView-1.0.3.ebuild | 87 ------------------------
sci-chemistry/specView/specView-1.0.3_p2.ebuild | 87 ------------------------
sci-chemistry/specView/specView-1.0.4.ebuild | 88 -------------------------
6 files changed, 366 deletions(-)
diff --git a/sci-chemistry/specView/files/specView
b/sci-chemistry/specView/files/specView
deleted file mode 100644
index bca546ca7..000000000
--- a/sci-chemistry/specView/files/specView
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-export CCPNMR_TOP_DIR=gentoo_sitedir
-export PYTHONPATH=.:${CCPNMR_TOP_DIR}/specView/python
-export LD_LIBRARY_PATH=gentoolibdir
-export TCL_LIBRARY=gentootcl
-export TK_LIBRARY=gentootk
-export PSIPRED_DIR=gentoousr
-gentoopython -O ${CCPNMR_TOP_DIR}/specView/python/ccpnmr/specView/SpecView.py
$@
diff --git a/sci-chemistry/specView/metadata.xml
b/sci-chemistry/specView/metadata.xml
deleted file mode 100644
index 8937bad0b..000000000
--- a/sci-chemistry/specView/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemis...@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-chemistry/specView/specView-1.0.2.ebuild
b/sci-chemistry/specView/specView-1.0.2.ebuild
deleted file mode 100644
index 39136056d..000000000
--- a/sci-chemistry/specView/specView-1.0.2.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview";
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV}.tar.gz";
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:=
-I\"$(python_get_includedir)\"
-I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}
diff --git a/sci-chemistry/specView/specView-1.0.3.ebuild
b/sci-chemistry/specView/specView-1.0.3.ebuild
deleted file mode 100644
index 587ff0051..000000000
--- a/sci-chemistry/specView/specView-1.0.3.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview";
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV}.tar.gz";
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:=
-I\"$(python_get_includedir)\"
-I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}
diff --git a/sci-chemistry/specView/specView-1.0.3_p2.ebuild
b/sci-chemistry/specView/specView-1.0.3_p2.ebuild
deleted file mode 100644
index ab85222d6..000000000
--- a/sci-chemistry/specView/specView-1.0.3_p2.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview";
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV/_p/r}.tar.gz";
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:=
-I\"$(python_get_includedir)\"
-I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}
diff --git a/sci-chemistry/specView/specView-1.0.4.ebuild
b/sci-chemistry/specView/specView-1.0.4.ebuild
deleted file mode 100644
index beb71a4df..000000000
--- a/sci-chemistry/specView/specView-1.0.4.ebuild
+++ /dev/null
@@ -1,88 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit flag-o-matic multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview";
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV/_p/r}.tar.gz";
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- append-cflags -fPIC
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:=
-I\"$(python_get_includedir)\"
-I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:=
-L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}
