commit: 0e960307417d5306f51c0d73c00c4a68cd47e529
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Nov 24 21:36:55 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Nov 24 21:36:55 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0e960307
sci-biology/kraken: version bump
Package-Manager: Portage-2.3.14, Repoman-2.3.6
sci-biology/kraken/{kraken-0.10.5.ebuild => kraken-1.0.ebuild} | 10 ++++------
1 file changed, 4 insertions(+), 6 deletions(-)
diff --git a/sci-biology/kraken/kraken-0.10.5.ebuild
b/sci-biology/kraken/kraken-1.0.ebuild
similarity index 85%
rename from sci-biology/kraken/kraken-0.10.5.ebuild
rename to sci-biology/kraken/kraken-1.0.ebuild
index d5fb4545e..b579a7eef 100644
--- a/sci-biology/kraken/kraken-0.10.5.ebuild
+++ b/sci-biology/kraken/kraken-1.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -9,8 +9,8 @@ inherit perl-module
DESCRIPTION="Detect sequencing project contaminants by mapping reads to
taxonomic groups"
HOMEPAGE="http://ccb.jhu.edu/software/kraken
http://genomebiology.com/2014/15/3/R46";
-SRC_URI="http://ccb.jhu.edu/software/kraken/dl/kraken-0.10.5-beta.tgz
- http://ccb.jhu.edu/software/kraken/MANUAL.html";
+SRC_URI="https://github.com/DerrickWood/kraken/archive/v1.0.tar.gz ->
${P}.tar.gz
+ http://ccb.jhu.edu/software/kraken/MANUAL.html -> ${P}_MANUAL.html"
LICENSE="GPL-3"
SLOT="0"
@@ -22,8 +22,6 @@ RDEPEND="${DEPEND}
dev-lang/perl
net-misc/wget"
-S="${WORKDIR}"/kraken-0.10.5-beta
-
src_prepare(){
sed -e 's/^CXX = /CXX ?= /' -e 's/^CXXFLAGS = /CXXFLAGS ?= /' -i
src/Makefile || die
echo "exit 0" >> install_kraken.sh || die
@@ -34,7 +32,7 @@ src_compile(){
}
src_install(){
- dohtml "${DISTDIR}"/MANUAL.html
+ dohtml "${DISTDIR}"/${P}_MANUAL.html
perl_set_version
insinto ${VENDOR_LIB}/${PN}
doins destdir/*.pm
