commit: a41c01197596738c1f3af00bda7e3cbf52bc9f1c Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Mon Jan 1 12:42:45 2018 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Mon Jan 1 12:42:45 2018 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a41c0119
sci-biology/fasta: Remove old Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/fasta/Manifest | 1 - sci-biology/fasta/fasta-35.4.10.ebuild | 57 --------------------------- sci-biology/fasta/files/35.4.10-ldflags.patch | 26 ------------ 3 files changed, 84 deletions(-) diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest index 847e1f925c0..800c5b2628b 100644 --- a/sci-biology/fasta/Manifest +++ b/sci-biology/fasta/Manifest @@ -1,2 +1 @@ -DIST fasta-35.4.10.tar.gz 618971 BLAKE2B cbc413c13f7d5151add9886eb0fbe1d55d9b1847f406ff8fe614e729c6c3ab155711b6c38a2085eabd3f27506562a98ca8d9f1409525f27fe091b30f3a1e840d SHA512 f04268f0eea59cd40985c86597ab68bef40ee28e6ca914a7182c0edfe943ec8fb2a860558f422f210a4c03f3c34f36c677bd3971bc240cb87695826c755f5a47 DIST fasta-36.3.5e.tar.gz 943763 BLAKE2B 6234d0aee76af6614e6d25ebcfbdfae080db5bc5adf611aeb6edc53ed7c6cb6cef257bf852ed39bc286527cec4175c251765ce23ea5ff39d12ff8947dba97ac6 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812 diff --git a/sci-biology/fasta/fasta-35.4.10.ebuild b/sci-biology/fasta/fasta-35.4.10.ebuild deleted file mode 100644 index 8cad4d2a8b0..00000000000 --- a/sci-biology/fasta/fasta-35.4.10.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI="2" - -inherit eutils flag-o-matic toolchain-funcs - -DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package" -HOMEPAGE="http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml"; -SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}3/${P}.tar.gz"; - -LICENSE="fasta" -SLOT="0" -KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" -IUSE="debug cpu_flags_x86_sse2 test" - -DEPEND="test? ( app-shells/tcsh )" -RDEPEND="" - -src_prepare() { - CC_ALT= - CFLAGS_ALT= - ALT= - - use debug && append-flags -DDEBUG - - if [[ $(tc-getCC) == *icc* ]]; then - CC_ALT=icc - ALT="${ALT}_icc" - else - CC_ALT=$(tc-getCC) - use x86 && ALT="32" - use amd64 && ALT="64" - fi - - if use cpu_flags_x86_sse2 ; then - ALT="${ALT}_sse2" - append-flags -msse2 - [[ $(tc-getCC) == *icc* ]] || append-flags -ffast-math - fi - - export CC_ALT="${CC_ALT}" - export ALT="${ALT}" - - epatch "${FILESDIR}"/${PV}-ldflags.patch -} - -src_compile() { - cd src - emake -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all || die -} - -src_install() { - dobin bin/* || die - doman doc/{prss3.1,fasta35.1,pvcomp.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1} || die - dodoc FASTA_LIST README doc/{README.versions,readme*,fasta*,changes*} || die -} diff --git a/sci-biology/fasta/files/35.4.10-ldflags.patch b/sci-biology/fasta/files/35.4.10-ldflags.patch deleted file mode 100644 index c3b7a9b5690..00000000000 --- a/sci-biology/fasta/files/35.4.10-ldflags.patch +++ /dev/null @@ -1,26 +0,0 @@ -diff --git a/make/Makefile.pcom b/make/Makefile.pcom -index a808667..405be95 100644 ---- a/make/Makefile.pcom -+++ b/make/Makefile.pcom -@@ -274,16 +274,16 @@ print_pssm : print_pssm.c getseq.c karlin.c apam.c - $(CC) -o print_pssm $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c $(LIB_M) - - map_db : map_db.c uascii.h ncbl2_head.h -- $(CC) $(CFLAGS) -o $(BIN)/map_db map_db.c -+ $(CC) $(CFLAGS) $(HFLAGS) $(BIN)/map_db map_db.c - - list_db : list_db.c -- $(CC) $(CFLAGS) -o $(BIN)/list_db list_db.c -+ $(CC) $(CFLAGS) $(HFLAGS) $(BIN)/list_db list_db.c - - lav2ps : lav2plt.o lavplt_ps.o -- $(CC) -DUNIX -o $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm -+ $(CC) -DUNIX $(HFLAGS) $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm - - lav2svg : lav2plt.o lavplt_svg.o -- $(CC) -DUNIX -o $(BIN)/lav2svg lav2plt.o lavplt_svg.o -lm -+ $(CC) -DUNIX $(HFLAGS) $(BIN)/lav2svg lav2plt.o lavplt_svg.o -lm - - res_stats : res_stats.o scale_se.o -- $(CC) -DUNIX -o $(BIN)/res_stats res_stats.o scale_se.o -lm -+ $(CC) -DUNIX $(HFLAGS) $(BIN)/res_stats res_stats.o scale_se.o -lm
