commit: 3f6ffb94adc1d3f7209d7ac33edb1fe0165bd487
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan 24 20:58:04 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan 24 20:58:04 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3f6ffb94
sci-biology/nanopolish: update compile procedure and deps
Package-Manager: Portage-2.3.19, Repoman-2.3.6
sci-biology/nanopolish/nanopolish-9999.ebuild | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/nanopolish/nanopolish-9999.ebuild
b/sci-biology/nanopolish/nanopolish-9999.ebuild
index 92c5f41d3..cea5cce27 100644
--- a/sci-biology/nanopolish/nanopolish-9999.ebuild
+++ b/sci-biology/nanopolish/nanopolish-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -21,7 +21,7 @@ IUSE=""
# The bundled version of htslib in is 1.2.1 as of now although 1.5.1 already
exists
DEPEND=">=sci-libs/hdf5-1.8.14[threads]
>=dev-cpp/eigen-3.2.5
- sci-libs/htslib:0
+ >=sci-libs/htslib-1.4:0
sci-libs/fast5"
RDEPEND="${DEPEND}
sci-biology/biopython"
@@ -34,7 +34,7 @@ src_prepare(){
src_compile(){
# >=gcc-4.8 but <gcc-7 is needed
# https://github.com/jts/nanopolish/issues/145
- emake HDF5="noinstall" EIGEN="nofetch" HTS_LIB=-lhts
HTS_INCLUDE=-I/usr/include/htslib EIGEN_INCLUDE=-I/usr/include/eigen3 # TODO:
FAST5_INCLUDE=-I/usr/include/fast5
+ emake HDF5="noinstall" EIGEN="noinstall" HTS="noinstall" HTS_LIB=-lhts
HTS_INCLUDE=-I/usr/include/htslib EIGEN_INCLUDE=-I/usr/include/eigen3 # TODO:
FAST5_INCLUDE=-I/usr/include/fast5
}
src_install(){
