[gentoo-commits] proj/sci:master commit in: sci-biology/augustus/

[Martin Mokrejs]

commit:     cf04df0e7dad1b7779e01e24071a3c3600e2cebf
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 23 00:22:22 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 23 00:22:22 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=cf04df0e

sci-biology/augustus: respect EPREFIX and enable comparative gene prediction

Package-Manager: Portage-2.3.24, Repoman-2.3.6

 sci-biology/augustus/augustus-3.3.ebuild | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/sci-biology/augustus/augustus-3.3.ebuild 
b/sci-biology/augustus/augustus-3.3.ebuild
index 08d0687ab..b050f1da2 100644
--- a/sci-biology/augustus/augustus-3.3.ebuild
+++ b/sci-biology/augustus/augustus-3.3.ebuild
@@ -30,6 +30,10 @@ src_prepare() {
        # epatch "${FILESDIR}"/${P}-sane-build.patch
        tc-export CC CXX
        sed -e 's/ -O3//g' -i src/Makefile || die
+       # enable comparative gene prediction (needs c++11 compiler)
+       sed -e 's/^# COMPGENEPRED/COMPGENEPRED/' -i common.mk || die
+       # respect $EPREFIX
+       sed -e 's#^INCLUDES = /usr/include/bamtools#INCLUDES = 
${EPREFIX}/usr/include/bamtools#' -i auxprogs/bam2hints/Makefile || die
 }
 
 src_compile() {