commit: 3724acdd4d192ac400d81a94f91e957c0e832ccd
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Mar 31 00:15:01 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Mar 31 00:15:01 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3724acdd
sci-biology/BRAKER: version bump, update LICENSE
Package-Manager: Portage-2.3.24, Repoman-2.3.6
.../{BRAKER-2.ebuild => BRAKER-2.1.0.ebuild} | 30 +++++++++-------------
1 file changed, 12 insertions(+), 18 deletions(-)
diff --git a/sci-biology/BRAKER/BRAKER-2.ebuild
b/sci-biology/BRAKER/BRAKER-2.1.0.ebuild
similarity index 58%
rename from sci-biology/BRAKER/BRAKER-2.ebuild
rename to sci-biology/BRAKER/BRAKER-2.1.0.ebuild
index b4c752457..13d63d4b8 100644
--- a/sci-biology/BRAKER/BRAKER-2.ebuild
+++ b/sci-biology/BRAKER/BRAKER-2.1.0.ebuild
@@ -10,15 +10,17 @@ DESCRIPTION="Gene prediction based on RNA-Seq using
GeneMark-ET and AUGUSTUS"
# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf
HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker
http://bioinf.uni-greifswald.de/augustus/downloads";
-SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER"${PV}".tar.gz
-> ${P}.tar.gz"
-# Download BRAKER1 from
http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz.
-# The most recent release is version 1.8, from December 15th 2015.
-# Example data for testing the BRAKER1 pipeline is available at
-# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1examples.tar.gz
(1.1 GB).
-
-LICENSE="GPL-3"
+SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER_v"${PV}".tar.gz
-> ${P}.tar.gz"
+# Example data for testing the BRAKER2 pipeline is available at
+# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER2examples.tar.gz
(1.1 GB).
+
+# BRAKER2 is using the Artistic-1.0 version without clause 8 about
+# commercial distribution
+# See discussion at https://opensource.org/licenses/artistic-license-1.0
+# Practically the license is same as http://dev.perl.org/licenses/artistic.html
+LICENSE="Artistic"
SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND=""
@@ -26,23 +28,15 @@ RDEPEND="${DEPEND}
dev-perl/Scalar-Util-Numeric
sci-biology/augustus"
#>=sci-biology/GeneMark_ET-bin-4.29"
-#
-# BUG:
-# this causes:
-# [blocks B ] <perl-core/Scalar-List-Utils-1.380.0
("<perl-core/Scalar-List-Utils-1.380.0" is blocking
virtual/perl-Scalar-List-Utils-1.380.0)
-
-S="${WORKDIR}"/BRAKER_v"${PV}".0
-src_prepare(){
- sed -e 's/^use helpMod/use BRAKER::helpMod/' -i braker.pl || die
-}
+S="${WORKDIR}"/BRAKER_v"${PV}"
src_install(){
perl_set_version
dobin *.pl
insinto ${VENDOR_LIB}/${PN}
doins *.pm
- dodoc README.braker
+ dodoc userguide.pdf
}
pkg_postinst(){
