commit: 76473186d32683782345c0271a225416c49e7d27 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Jul 4 13:41:22 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Jul 4 13:41:22 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=76473186
sci-biology/Atlas-Link: noted dependence, see bug #516366 --- sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild | 26 ++++++++++++++++++++++++++ sci-biology/Atlas-Link/ChangeLog | 10 ++++++++++ sci-biology/Atlas-Link/metadata.xml | 9 +++++++++ 3 files changed, 45 insertions(+) diff --git a/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild new file mode 100644 index 0000000..bb15e64 --- /dev/null +++ b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +DESCRIPTION="Links and orients genome sequence contigs using mate-pair information or superscaffolds .agp files" +HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-link"; +SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas_Link/Atlas-link.tar.gz"; + +LICENSE="HGSC-BCM" +SLOT="0" +KEYWORDS="" +IUSE="" + +# https://github.com/gitpan/Algorithm-ClusterPoints +DEPEND="dev-lang/perl + dev-perl/Graph + dev-perl/Algorithm-ClusterPoints + dev-perl/XML-DOM + dev-perl/Statistics-Descriptive" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/Atlas-link diff --git a/sci-biology/Atlas-Link/ChangeLog b/sci-biology/Atlas-Link/ChangeLog new file mode 100644 index 0000000..cb92c11 --- /dev/null +++ b/sci-biology/Atlas-Link/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/Atlas-Link +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*Atlas-Link-0.01 (04 Jul 2014) + + 04 Jul 2014; Martin Mokrejs <[email protected]> + +Atlas-Link-0.01.ebuild, +metadata.xml: + sci-biology/Atlas-Link: noted dependence, see bug #516366 + diff --git a/sci-biology/Atlas-Link/metadata.xml b/sci-biology/Atlas-Link/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/Atlas-Link/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
