commit:     9a80747f1a93efa92be9944ba77feafd4650c7ea
Author:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sat Apr  7 19:01:22 2018 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sun Apr  8 09:53:52 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9a80747f

sci-libs/avogadrolibs: Add 1.91.0_p20180406 snapshot

Closes: https://bugs.gentoo.org/645248
Closes: https://bugs.gentoo.org/649862
Closes: https://bugs.gentoo.org/588706
Closes: https://bugs.gentoo.org/577214
Package-Manager: Portage-2.3.28, Repoman-2.3.9

 sci-libs/avogadrolibs/Manifest                     |  1 +
 .../avogadrolibs-1.91.0_pre20180406.ebuild         | 71 ++++++++++++++++++++++
 ...gadrolibs-1.91.0_pre20180406-underlinking.patch | 18 ++++++
 sci-libs/avogadrolibs/metadata.xml                 |  3 +-
 4 files changed, 92 insertions(+), 1 deletion(-)

diff --git a/sci-libs/avogadrolibs/Manifest b/sci-libs/avogadrolibs/Manifest
index 1d04e63cc1b..bbf158508b8 100644
--- a/sci-libs/avogadrolibs/Manifest
+++ b/sci-libs/avogadrolibs/Manifest
@@ -1 +1,2 @@
 DIST avogadrolibs-0.9.0.tar.gz 742370 BLAKE2B 
cd104cea48b82a1ac86fdb9e93717e2647f57a0d713673d8b340d259f73d6d9985decf0c4e4d83f13d54d12ae2aefee8e75b5d04861f8ab67b9b42690c3c74f7
 SHA512 
7cb000cd6399f33483c38b4f8a9c4a4688f5054cba35e101bed0f2371cea614ace6b3fc65c3ed1418976afef4462a09be868500435a5ae9c98a7ac496c10c36f
+DIST avogadrolibs-1.91.0_pre20180406.tar.gz 857345 BLAKE2B 
8e5c6b0a838a2a6b7dc925c1b544ab4d4de8b7769b1fe8d787127a1014b1243da89a2a6f6cfc871181f81a443c3ee63d758369f003afaf591c9373c9d5122ee3
 SHA512 
1814b2105615aabc1df78b14c581e78fea20a1e4ace8979bb2ad123ab0994d90c3935e37f0cc58b60d3307ffe682599a93d8cadddc22b4ba524caaec1a2c5319

diff --git a/sci-libs/avogadrolibs/avogadrolibs-1.91.0_pre20180406.ebuild 
b/sci-libs/avogadrolibs/avogadrolibs-1.91.0_pre20180406.ebuild
new file mode 100644
index 00000000000..6671ed518ff
--- /dev/null
+++ b/sci-libs/avogadrolibs/avogadrolibs-1.91.0_pre20180406.ebuild
@@ -0,0 +1,71 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+COMMIT=f414794a168712f72884cdcfba818def5f42e721
+inherit cmake-utils
+
+DESCRIPTION="Advanced molecule editor and visualizer 2 - libraries"
+HOMEPAGE="https://www.openchemistry.org/";
+SRC_URI="https://github.com/OpenChemistry/${PN}/archive/${COMMIT}.tar.gz -> 
${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD GPL-2+"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="archive doc hdf5 qt5 static-plugins test vtk"
+
+# TODO: Not yet packaged:
+# sci-libs/libmsym (https://github.com/mcodev31/libmsym)
+# sci-libs/spglib (https://atztogo.github.io/spglib/)
+RDEPEND="
+       >=sci-chemistry/molequeue-0.7
+       archive? ( app-arch/libarchive )
+       hdf5? ( sci-libs/hdf5:= )
+       qt5? (
+               dev-qt/qtconcurrent:5
+               dev-qt/qtcore:5
+               dev-qt/qtgui:5
+               dev-qt/qtnetwork:5
+               dev-qt/qtwidgets:5
+               media-libs/glew:0=
+       )
+       vtk? ( sci-libs/vtk )
+"
+DEPEND="${RDEPEND}
+       dev-cpp/eigen:3
+       test? ( dev-cpp/gtest )"
+
+S="${WORKDIR}/${PN}-${COMMIT}"
+
+PATCHES=(
+       "${FILESDIR}"/${PN}-0.7.2-6464.patch
+       "${FILESDIR}/"${P}-underlinking.patch
+)
+
+src_configure() {
+       local mycmakeargs=(
+               -DUSE_PROTOCALL=OFF
+               -DBUILD_GPL_PLUGINS=ON
+               -DUSE_MOLEQUEUE=ON
+               -DUSE_LIBMSYM=OFF
+               -DUSE_LIBSPG=OFF
+               -DUSE_PYTHON=OFF
+               -DUSE_LIBARCHIVE=$(usex archive)
+               -DBUILD_DOCUMENTATION=$(usex doc)
+               -DUSE_HDF5=$(usex hdf5)
+               -DUSE_OPENGL=$(usex qt5)
+               -DUSE_QT=$(usex qt5)
+               -DBUILD_STATIC_PLUGINS=$(usex static-plugins)
+               -DENABLE_TESTING=$(usex test)
+               -DUSE_VTK=$(usex vtk)
+       )
+       cmake-utils_src_configure
+}
+
+src_install() {
+       cmake-utils_src_install
+
+       # TODO: bundles jsoncpp
+       rm "${ED%/}"/usr/lib64/libjsoncpp.a || die
+}

diff --git 
a/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-underlinking.patch
 
b/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-underlinking.patch
new file mode 100644
index 00000000000..f6f39c9e6b7
--- /dev/null
+++ 
b/sci-libs/avogadrolibs/files/avogadrolibs-1.91.0_pre20180406-underlinking.patch
@@ -0,0 +1,18 @@
+Fix underlinking problems in shared libraries.
+
+--- a/avogadro/qtplugins/playertool/CMakeLists.txt
++++ b/avogadro/qtplugins/playertool/CMakeLists.txt
+@@ -7,3 +7,5 @@
+   ""
+   playertool.qrc
+ )
++
++target_link_libraries(PlayerTool LINK_PRIVATE Qt5OpenGL)
+--- a/avogadro/qtplugins/qtaim/CMakeLists.txt
++++ b/avogadro/qtplugins/qtaim/CMakeLists.txt
+@@ -34,3 +34,5 @@
+ 
+ target_link_libraries(QTAIMScenePlugin
+   LINK_PRIVATE AvogadroRendering ${Qt5Concurrent_LIBRARIES})
++target_link_libraries(QTAIMExtension
++  LINK_PRIVATE ${Qt5Concurrent_LIBRARIES})

diff --git a/sci-libs/avogadrolibs/metadata.xml 
b/sci-libs/avogadrolibs/metadata.xml
index ea8e4fdee06..ff1789dfa77 100644
--- a/sci-libs/avogadrolibs/metadata.xml
+++ b/sci-libs/avogadrolibs/metadata.xml
@@ -6,8 +6,9 @@
                <name>Gentoo Chemistry Project</name>
        </maintainer>
        <use>
+               <flag name="archive">Enable archive support using 
<pkg>app-arch/libarchive</pkg></flag>
                <flag name="static-plugins">Build all plugins statically into 
main plugin modules</flag>
-               <flag name="vtk">include vtk support</flag>
+               <flag name="vtk">Enable <pkg>sci-libs/vtk</pkg> support</flag>
        </use>
        <upstream>
                <remote-id type="github">OpenChemistry/avogadrolibs</remote-id>

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