commit: 3a1f44b97d5e3f2579efe5b83c93cf3114835c84 Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Apr 12 08:49:25 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Apr 12 08:49:25 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3a1f44b9
sci-biology/genometools: disable building using bundled libs The build packaging system is suboptimal. Hand-edit the Makefile to force use of shared libs from system-wide. This brings us to a non-functional package because two lua-based packages are not yet in the tree. https://github.com/genometools/genometools/issues/742 https://github.com/genometools/genometools/pull/748 Package-Manager: Portage-2.3.27, Repoman-2.3.9 sci-biology/genometools/genometools-1.5.10.ebuild | 26 +++++++++++++++++++---- 1 file changed, 22 insertions(+), 4 deletions(-) diff --git a/sci-biology/genometools/genometools-1.5.10.ebuild b/sci-biology/genometools/genometools-1.5.10.ebuild index 23fe474e2..026eabc48 100644 --- a/sci-biology/genometools/genometools-1.5.10.ebuild +++ b/sci-biology/genometools/genometools-1.5.10.ebuild @@ -9,16 +9,34 @@ SRC_URI="http://genometools.org/pub/${P}.tar.gz"; LICENSE="ICS" SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" +KEYWORDS="" +IUSE="cairo" DEPEND=" dev-libs/glib x11-libs/pango - x11-libs/cairo" + cairo? ( x11-libs/cairo ) + sci-biology/samtools:0.1-legacy + dev-db/sqlite:3 + dev-lang/lua + dev-lua/lpeg + dev-lua/luafilesystem + dev-libs/tre" +# http://keplerproject.github.io/md5/ +# http://keplerproject.org/cgilua RDEPEND="${DEPEND}" src_prepare(){ - sed -e "s#/usr/local#"${EPREFIX}"/usr#" -i Makefile || die + sed -e "s#/usr/local#"${EPREFIX}"/usr#g" -i Makefile || die + sed -e "s#/usr/include/bam#${EPREFIX}/usr/include/bam-0.1-legacy#" -i Makefile || die + sed -e "s#-lbam#-lbam-0.1-legacy#" -i Makefile || die eapply_user } + +src_compile(){ + local myemakeargs=( useshared=yes ) + ! use cairo && myemakeargs+=( cairo=no ) + use x86 && myemakeargs+=( 32bit=yes ) + use amd64 && myemakeargs+=( 64bit=yes ) + emake ${myemakeargs} +}
