commit: 9b2792faf3aac9829d3c30dc8ea5c5ec92fc9a8f Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Apr 21 11:39:30 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Apr 21 11:39:30 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9b2792fa
sci-biology/tigmint: new package It is not yet enabled because an install procedure is missing. Bug: https://github.com/bcgsc/tigmint/issues/10 Package-Manager: Portage-2.3.28, Repoman-2.3.9 sci-biology/tigmint/metadata.xml | 12 ++++++++++++ sci-biology/tigmint/tigmint-1.1.0.ebuild | 31 +++++++++++++++++++++++++++++++ 2 files changed, 43 insertions(+) diff --git a/sci-biology/tigmint/metadata.xml b/sci-biology/tigmint/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/tigmint/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/tigmint/tigmint-1.1.0.ebuild b/sci-biology/tigmint/tigmint-1.1.0.ebuild new file mode 100644 index 000000000..66a1f3460 --- /dev/null +++ b/sci-biology/tigmint/tigmint-1.1.0.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DESCRIPTION="Correct misassemblies using linked reads from 10x Genomics Chromium" +HOMEPAGE="https://github.com/bcgsc/tigmint"; +SRC_URI="https://github.com/bcgsc/tigmint/archive/1.1.0.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + dev-python/intervaltree + sci-biology/pybedtools + sci-biology/pysam + dev-python/statistics" +RDEPEND="${DEPEND} + sci-biology/bwa + sci-biology/bedtools + sci-biology/samtools:0 + sci-biology/seqtools + dev-util/makefile2graph + media-gfx/graphviz + dev-vcs/git + dev-libs/libxslt + net-misc/curl" +# for full features also sci-biology/abyss should be installed but it addition here +# would create circular dependency
