[gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/

[Martin Mokrejs]

commit:     026f3272fc9085f69f1a6caf4a1ccb8b9d887ab7
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Apr 23 19:13:21 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Apr 23 19:13:21 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=026f3272

sci-biology/jellyfish: install bundled PDF manual

And do not download an old version at all.

Package-Manager: Portage-2.3.31, Repoman-2.3.9

 sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild                      | 5 ++---
 .../jellyfish/{jellyfish-2.2.6-r1.ebuild => jellyfish-2.2.9.ebuild}  | 5 ++---
 2 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild 
b/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
index 54cc724eb..692c9e9ee 100644
--- a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
@@ -7,8 +7,7 @@ inherit eutils flag-o-matic autotools
 
 DESCRIPTION="k-mer counter within reads for assemblies"
 HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
-SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz
-       ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf";
+SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz";
 
 # older version is hidden in 
trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
 
@@ -48,5 +47,5 @@ src_install(){
        mv "${ED}"/usr/include/"${P}"/"${PN}"/* 
"${ED}/usr/include/${PN}${SLOT}/" || die
        rm -r "${ED}/usr/include/${P}" || die
        mv "${ED}"/usr/share/man/man1/jellyfish.1 
"${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die
-       dodoc "${DISTDIR}"/JellyfishUserGuide.pdf
+       dodoc doc/jellyfish.pdf
 }

diff --git a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild 
b/sci-biology/jellyfish/jellyfish-2.2.9.ebuild
similarity index 92%
copy from sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
copy to sci-biology/jellyfish/jellyfish-2.2.9.ebuild
index 54cc724eb..692c9e9ee 100644
--- a/sci-biology/jellyfish/jellyfish-2.2.6-r1.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.2.9.ebuild
@@ -7,8 +7,7 @@ inherit eutils flag-o-matic autotools
 
 DESCRIPTION="k-mer counter within reads for assemblies"
 HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
-SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz
-       ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf";
+SRC_URI="https://github.com/gmarcais/Jellyfish/releases/download/v${PV}/${P}.tar.gz";
 
 # older version is hidden in 
trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
 
@@ -48,5 +47,5 @@ src_install(){
        mv "${ED}"/usr/include/"${P}"/"${PN}"/* 
"${ED}/usr/include/${PN}${SLOT}/" || die
        rm -r "${ED}/usr/include/${P}" || die
        mv "${ED}"/usr/share/man/man1/jellyfish.1 
"${ED}"/usr/share/man/man1/jellyfish"${SLOT}".1 || die
-       dodoc "${DISTDIR}"/JellyfishUserGuide.pdf
+       dodoc doc/jellyfish.pdf
 }