commit: f093654801e9bb7ad831c30a592f1da016ed9aca
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 17 12:38:17 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan 17 12:38:17 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f0936548
sci-biology/blasr: partial improvements of the ebuild
Package-Manager: Portage-2.3.55, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
sci-biology/blasr/blasr-9999.ebuild | 30 ++++++++++++++++++++++--------
1 file changed, 22 insertions(+), 8 deletions(-)
diff --git a/sci-biology/blasr/blasr-9999.ebuild
b/sci-biology/blasr/blasr-9999.ebuild
index 2b1716bdd..3fe868450 100644
--- a/sci-biology/blasr/blasr-9999.ebuild
+++ b/sci-biology/blasr/blasr-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -16,17 +16,31 @@ SLOT="0"
IUSE="hdf5"
KEYWORDS=""
-DEPEND="hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
+CDEPEND="
+ dev-util/meson
+ dev-util/ninja
+ dev-util/cmake
+ dev-util/pkgconfig"
+# needs libblasr
+DEPEND="
+ sci-biology/pbbam
+ dev-libs/boost:=[threads]
+ hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h
RDEPEND=""
S="${WORKDIR}/blasr-9999"
-src_configure(){
- if use hdf5; then \
- python ./configure.py --shared --sub --no-pbbam
HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
- else
- python ./configure.py --shared --sub --no-pbbam || die
- fi
+#src_configure(){
+# if use hdf5; then \
+# python ./configure.py --shared --sub --no-pbbam
HDF5_INCLUDE="${EPREFIX}"/usr/include HDF5_LIB="${EPREFIX}"/usr/lib64 || die
+# else
+# python ./configure.py --shared --sub --no-pbbam || die
+# fi
+#}
+
+src_compile(){
+ bash scripts/ci/build.sh || die
+ # BUG: meson.build:54:0: ERROR: Dependency "pbbam" not found, tried
pkgconfig and cmake
}
src_install() {
