commit: 458e1564c2fa03fefffd8a8f9dc8975d95f26c3f Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Jan 22 15:17:58 2019 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Jan 22 15:17:58 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=458e1564
sci-libs/libmaus2: upstream moved from github to gitlab https://github.com/gt1/libmaus2/issues/28#issuecomment-456336598 Package-Manager: Portage-2.3.56, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> .../{libmaus2-2.0.499.ebuild => libmaus2-2.0.587.ebuild} | 15 +++++++-------- sci-libs/libmaus2/libmaus2-9999.ebuild | 11 +++++------ 2 files changed, 12 insertions(+), 14 deletions(-) diff --git a/sci-libs/libmaus2/libmaus2-2.0.499.ebuild b/sci-libs/libmaus2/libmaus2-2.0.587.ebuild similarity index 70% rename from sci-libs/libmaus2/libmaus2-2.0.499.ebuild rename to sci-libs/libmaus2/libmaus2-2.0.587.ebuild index cebe44161..1c61df056 100644 --- a/sci-libs/libmaus2/libmaus2-2.0.499.ebuild +++ b/sci-libs/libmaus2/libmaus2-2.0.587.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -7,36 +7,35 @@ inherit autotools DESCRIPTION="Library for biobambam2" HOMEPAGE="https://github.com/gt1/libmaus"; -SRC_URI="https://github.com/gt1/libmaus2/archive/2.0.499-release-20180606122508.tar.gz"; +SRC_URI="https://gitlab.com/german.tischler/libmaus2/-/archive/master/${P}.tar.gz"; LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64 ~x86" IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" DEPEND=" !sci-libs/libmaus - sci-libs/io_lib + >=sci-libs/io_lib-1.14.11 app-arch/snappy - sci-biology/seqan sci-libs/fftw sci-libs/hdf5 net-libs/gnutls dev-libs/nettle" # --with-daligner # --with-irods -S="${WORKDIR}"/libmaus2-2.0.499-release-20180606122508 +S="${WORKDIR}"/libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901 src_configure(){ local CONFIG_OPTS use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) - econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \ + econf --with-snappy --with-io_lib $CONFIG_OPTS \ --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw } pkg_postinst(){ - einfo "The io_lib, snappy and seqan dependencies are not strictly needed" + einfo "The io_lib, snappy dependencies are not strictly needed" einfo "but were forced for optimal libmaus2 performance." einfo "igzip is only used if gzip level is set to 11." } diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild index 01aa74a92..c371d5432 100644 --- a/sci-libs/libmaus2/libmaus2-9999.ebuild +++ b/sci-libs/libmaus2/libmaus2-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -7,7 +7,7 @@ inherit autotools git-r3 DESCRIPTION="Library for biobambam2" HOMEPAGE="https://github.com/gt1/libmaus"; -EGIT_REPO_URI="https://github.com/gt1/libmaus2.git"; +EGIT_REPO_URI="https://gitlab.com/german.tischler/libmaus2"; LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS SLOT="0" @@ -16,9 +16,8 @@ IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" DEPEND=" !sci-libs/libmaus - sci-libs/io_lib + >=sci-libs/io_lib-1.14.11 app-arch/snappy - sci-biology/seqan sci-libs/fftw sci-libs/hdf5 net-libs/gnutls @@ -35,12 +34,12 @@ src_configure(){ local CONFIG_OPTS use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) - econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \ + econf --with-snappy --with-io_lib $CONFIG_OPTS \ --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw } pkg_postinst(){ - einfo "The io_lib, snappy and seqan dependencies are not strictly needed" + einfo "The io_lib, snappy dependencies are not strictly needed" einfo "but were forced for optimal libmaus2 performance." einfo "igzip is only used if gzip level is set to 11." }
