commit: 9c3493015edd58f073ee3d0493753721a04a7d6b Author: Horea Christian <horea.christ <AT> yandex <DOT> com> AuthorDate: Sat Mar 2 18:05:25 2019 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sat Mar 2 18:07:33 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9c349301
sci-biology/afni: version bump Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Horea Christian <horea.christ <AT> yandex.com> profiles/package.mask | 1 + sci-biology/afni/afni-19.0.21.ebuild | 68 ++++++++++++++++++++++++++++++++++++ 2 files changed, 69 insertions(+) diff --git a/profiles/package.mask b/profiles/package.mask index 25cd51884..9f3e2465b 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -39,6 +39,7 @@ sci-biology/samri # or more generally unbundling. Masked until unbundling # efforts ( https://github.com/afni/afni/pull/60 ) come to # fruition. +=sci-biology/afni-19.0.21 =sci-biology/afni-18.1.04 # Sebastien Fabbro <[email protected]> (23 Aug 2011) diff --git a/sci-biology/afni/afni-19.0.21.ebuild b/sci-biology/afni/afni-19.0.21.ebuild new file mode 100644 index 000000000..104015772 --- /dev/null +++ b/sci-biology/afni/afni-19.0.21.ebuild @@ -0,0 +1,68 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit eutils multilib pax-utils toolchain-funcs + +DESCRIPTION="An open-source environment for processing and displaying functional MRI data" +HOMEPAGE="http://afni.nimh.nih.gov/"; +SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="dev-libs/expat + media-libs/netpbm + media-libs/qhull + media-video/mpeg-tools + sci-libs/gsl + sys-devel/llvm:* + virtual/jpeg:0 + x11-libs/libGLw + x11-libs/libXft + x11-libs/libXi + x11-libs/libXpm + x11-libs/motif[-static-libs]" + +# x11-libs/motif[static-libs] breaks the build. +# See upstream discussion +# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348 + +DEPEND="${RDEPEND} + app-shells/tcsh" + +S="${WORKDIR}/${PN}-AFNI_${PV}/src" +BUILD="linux_fedora_19_64" +BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode) + +src_prepare() { + find -type f -exec sed -i -e "s/-lXp //g" {} + + cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile" + sed -e "s~CC = /usr/bin/gcc -O2 -m64~CC = $(tc-getCC) \$(CFLAGS)~" \ + -e "s~CCMIN = /usr/bin/gcc -m64~CCMIN = $(tc-getCC) \$(CFLAGS)~" \ + -e "s~LD = /usr/bin/gcc~LD = $(tc-getCC)~" \ + -e "s~AR = /usr/bin/ar~AR = $(tc-getAR)~" \ + -e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \ + -i Makefile || die "Could not edit Makefile" + # they provide somewhat problematic makefiles :( + sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\ + -i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile" + # upstream checks if $CC is EXACTLY gcc, else sets variables for Mac + find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i + eapply_user +} + +src_compile() { + emake -j1 all plugins suma_exec +} + +src_install() { + emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins + emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib + for CONFLICT in ${BIN_CONFLICTS[@]}; do + rm "${ED}/usr/bin/${CONFLICT}" + done +}
