commit: a6b601e64f7b9313fc7d7c2fec43d0f4d4d7ec1f Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Mar 30 06:42:42 2019 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Mar 30 06:42:42 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a6b601e6
sci-biology/ncbi-tools++: document possible issue with builds I have the following defined due to ncbi-tools++-18.0.0 installed on my system: /usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/32: /usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0: /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/32: /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0: /usr/lib/llvm/7/lib32: /usr/lib/llvm/7/lib64: /usr/lib64/itcl4.1.1: /usr/lib64/itk4.1.0: /lib64: /usr/lib64: /usr/local/lib64: /lib32: /usr/lib32: /usr/lib64/rust-1.29.2: /usr/lib64/R/lib: /usr/lib64/fltk: /usr/lib64/ncbi-tools++: /usr/lib64/staden: grep: /etc: No such file or directory grep: /etc/env.d: No such file or directory /etc/env.d/99ncbi-tools++:LDPATH=/usr/lib64/ncbi-tools++ ... That in turn makes linker pick "${WORKDIR}"/ncbi_cxx--22_0_0_build/lib/* files but later overrides some of them with /usr/lib64/ncbi-tools++/*, depending on the ordering of -lXXXXXX arguments. Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 5 +++-- sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 5 +++-- sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild | 3 ++- 3 files changed, 8 insertions(+), 5 deletions(-) diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild index 14e1fabda..68341a338 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -36,11 +36,12 @@ KEYWORDS="~amd64" REQUIRED_USE="${PYTHON_REQUIRED_USE}" # sys-libs/db should be compiled with USE=cxx +# dev-libs/boost must have Boost.Test suite, probably dev-libs/boost[test] then? DEPEND=" !sci-biology/sra_sdk app-arch/cpio berkdb? ( sys-libs/db:4.3[cxx] ) - boost? ( dev-libs/boost ) + boost? ( dev-libs/boost[tools] ) curl? ( net-misc/curl ) sqlite? ( dev-db/sqlite:3 ) mysql? ( virtual/mysql ) diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild index 3f1fc7bd1..c737392fd 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -35,11 +35,12 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" REQUIRED_USE="${PYTHON_REQUIRED_USE}" # sys-libs/db should be compiled with USE=cxx +# dev-libs/boost must have Boost.Test suite, probably dev-libs/boost[test] then? DEPEND=" !sci-biology/sra_sdk app-arch/cpio berkdb? ( sys-libs/db:4.3[cxx] ) - boost? ( dev-libs/boost ) + boost? ( dev-libs/boost[tools] ) curl? ( net-misc/curl ) sqlite? ( dev-db/sqlite:3 ) mysql? ( virtual/mysql ) diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild index 585042f9f..971789fb4 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-22.0.0.ebuild @@ -35,11 +35,12 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" REQUIRED_USE="${PYTHON_REQUIRED_USE}" # sys-libs/db should be compiled with USE=cxx +# dev-libs/boost must have Boost.Test suite, probably dev-libs/boost[test] then? DEPEND=" !sci-biology/sra_sdk app-arch/cpio berkdb? ( sys-libs/db:4.3[cxx] ) - boost? ( dev-libs/boost ) + boost? ( dev-libs/boost[tools] ) curl? ( net-misc/curl ) sqlite? ( >=dev-db/sqlite-3.6.6:3 ) mysql? ( virtual/mysql )