commit: ecf7fa5aeab4429879aa0ccf03297347bf2ef2be Author: Matthias Maier <tamiko <AT> gentoo <DOT> org> AuthorDate: Mon Aug 5 06:28:32 2019 +0000 Commit: Matthias Maier <tamiko <AT> gentoo <DOT> org> CommitDate: Mon Aug 5 06:51:37 2019 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ecf7fa5a
sci-libs/dealii: package migration from ::science overlay Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko <AT> gentoo.org> sci-libs/dealii/Manifest | 2 + sci-libs/dealii/dealii-9.1.1.ebuild | 145 ++++++++++++++++++++++++++++++++++++ sci-libs/dealii/dealii-9999.ebuild | 145 ++++++++++++++++++++++++++++++++++++ sci-libs/dealii/metadata.xml | 45 +++++++++++ 4 files changed, 337 insertions(+) diff --git a/sci-libs/dealii/Manifest b/sci-libs/dealii/Manifest new file mode 100644 index 00000000000..fa22d9957ee --- /dev/null +++ b/sci-libs/dealii/Manifest @@ -0,0 +1,2 @@ +DIST dealii-9.1.1-offline_documentation.tar.gz 211103151 BLAKE2B ef7cf48aa8019a2d42a38804744ff72cc7f744255fa27df852f8f93c86a02f2125458e0e525e57510bb98adc27aed933fefa27d556d8203c991dae9866c7d57a SHA512 5e2b71e9bdeb80875772356e2c873bc1f065f2a8c5c47923b74b471d464e4867c257e3a47b32341aa60af98e74e3ed2eceba8dedb4b157ab872681576ecbd5db +DIST dealii-9.1.1.tar.gz 19911088 BLAKE2B e8488833f11339ccffd4791b9b46ab77f1982cbbdeb11fab7f6b74ca2e17c3d648a2940f4462d0ac9c68bd619b3c4f43b4d8052d2903cbb9cae2fece93d81987 SHA512 02dd91e2b0f395960f900f4cbe00bd307a4762ffbc5f3838dcc34828937e96727efbbcc66fc3d357d6b00b0dddcbc6cd7709c4c03f067d92a8f72d4631b88bf1 diff --git a/sci-libs/dealii/dealii-9.1.1.ebuild b/sci-libs/dealii/dealii-9.1.1.ebuild new file mode 100644 index 00000000000..0da4f8ea6ed --- /dev/null +++ b/sci-libs/dealii/dealii-9.1.1.ebuild @@ -0,0 +1,145 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit cmake-utils eutils multilib + +# deal.II uses its own FindLAPACK.cmake file that calls into the system +# FindLAPACK.cmake module and does additional internal setup. Do not remove +# any of these modules: +CMAKE_REMOVE_MODULES_LIST="" + +DESCRIPTION="Solving partial differential equations with the finite element method" +HOMEPAGE="http://www.dealii.org/"; + +if [[ ${PV} = *9999* ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/dealii/dealii.git"; + SRC_URI="" + KEYWORDS="" +else + MY_PV="${PV//0_rc/rc}" + MY_P="${PN}-${MY_PV}" + SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${MY_P}.tar.gz -> ${P}.tar.gz + doc? ( + https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${MY_P}-offline_documentation.tar.gz + -> ${P}-offline_documentation.tar.gz + )" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + S="${WORKDIR}/${PN}-${MY_PV}" +fi + +LICENSE="LGPL-2.1+" +SLOT="0" +IUSE=" + adolc assimp arpack cpu_flags_x86_avx cpu_flags_x86_sse2 cuda +debug + doc +examples gmsh +gsl hdf5 +lapack metis mpi muparser nanoflann + opencascade netcdf p4est petsc scalapack slepc +sparse static-libs + sundials symengine +tbb trilinos +" + +# TODO: add slepc use flag once slepc is packaged for gentoo-science +REQUIRED_USE=" + p4est? ( mpi ) + slepc? ( petsc ) + trilinos? ( mpi )" + +RDEPEND="dev-libs/boost + app-arch/bzip2 + sys-libs/zlib + adolc? ( sci-libs/adolc ) + arpack? ( sci-libs/arpack[mpi=] ) + assimp? ( media-libs/assimp ) + cuda? ( dev-util/nvidia-cuda-sdk ) + gmsh? ( sci-libs/gmsh ) + gsl? ( sci-libs/gsl ) + hdf5? ( sci-libs/hdf5[mpi=] ) + lapack? ( virtual/lapack ) + metis? ( >=sci-libs/parmetis-4 ) + mpi? ( virtual/mpi ) + muparser? ( dev-cpp/muParser ) + nanoflann? ( sci-libs/nanoflann ) + netcdf? ( sci-libs/netcdf-cxx:0 ) + opencascade? ( sci-libs/opencascade:* ) + p4est? ( sci-libs/p4est[mpi] ) + petsc? ( sci-mathematics/petsc[mpi=] ) + scalapack? ( sci-libs/scalapack ) + slepc? ( sci-mathematics/slepc[mpi=] ) + sparse? ( sci-libs/umfpack ) + sundials? ( sci-libs/sundials ) + symengine? ( >=sci-libs/symengine-0.4:= ) + tbb? ( dev-cpp/tbb ) + trilinos? ( sci-libs/trilinos )" + +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen[dot] dev-lang/perl )" + +src_configure() { + # deal.II needs a custom build type: + local CMAKE_BUILD_TYPE=$(usex debug DebugRelease Release) + + local mycmakeargs=( + -DDEAL_II_PACKAGE_VERSION=9999 + -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF + -DDEAL_II_ALLOW_AUTODETECTION=OFF + -DDEAL_II_ALLOW_BUNDLED=OFF + -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF + -DDEAL_II_COMPILE_EXAMPLES=OFF + -DDEAL_II_DOCHTML_RELDIR="share/doc/${P}/html" + -DDEAL_II_DOCREADME_RELDIR="share/doc/${P}" + -DDEAL_II_COMPILE_EXAMPLES=OFF + -DDEAL_II_EXAMPLES_RELDIR="share/doc/${P}/examples" + -DDEAL_II_LIBRARY_RELDIR="$(get_libdir)" + -DDEAL_II_SHARE_RELDIR="share/${PN}" + -DDEAL_II_WITH_ZLIB=ON + -DDEAL_II_WITH_ADOLC="$(usex adolc)" + -DDEAL_II_WITH_ASSIMP="$(usex assimp)" + -DDEAL_II_WITH_ARPACK="$(usex arpack)" + -DDEAL_II_HAVE_AVX="$(usex cpu_flags_x86_avx)" + -DDEAL_II_WITH_CUDA="$(usex cuda)" + -DDEAL_II_HAVE_SSE2="$(usex cpu_flags_x86_sse2)" + -DDEAL_II_COMPONENT_DOCUMENTATION="$(usex doc)" + -DDEAL_II_COMPONENT_EXAMPLES="$(usex examples)" + -DDEAL_II_WITH_GMSH="$(usex gmsh)" + -DDEAL_II_WITH_GSL="$(usex gsl)" + -DDEAL_II_WITH_HDF5="$(usex hdf5)" + -DDEAL_II_WITH_LAPACK="$(usex lapack)" + -DDEAL_II_WITH_METIS="$(usex metis)" + -DDEAL_II_WITH_MPI="$(usex mpi)" + -DDEAL_II_WITH_MUPARSER="$(usex muparser)" + -DDEAL_II_WITH_NANOFLANN="$(usex nanoflann)" + -DDEAL_II_WITH_NETCDF="$(usex netcdf)" + -DOPENCASCADE_DIR="${CASROOT}" + -DDEAL_II_WITH_OPENCASCADE="$(usex opencascade)" + -DDEAL_II_WITH_P4EST="$(usex p4est)" + -DDEAL_II_WITH_PETSC="$(usex petsc)" + -DDEAL_II_WITH_SCALAPACK="$(usex scalapack)" + -DDEAL_II_WITH_SLEPC="$(usex slepc)" + -DDEAL_II_WITH_SUNDIALS="$(usex sundials)" + -DDEAL_II_WITH_SYMENGINE="$(usex symengine)" + -DDEAL_II_WITH_UMFPACK="$(usex sparse)" + -DBUILD_SHARED_LIBS="$(usex !static-libs)" + -DDEAL_II_PREFER_STATIC_LIBS="$(usex static-libs)" + -DDEAL_II_WITH_THREADS="$(usex tbb)" + -DDEAL_II_WITH_TRILINOS="$(usex trilinos)" + ) + cmake-utils_src_configure +} + +src_install() { + if use doc && [[ ${PV} != *9999* ]]; then + # copy missing images to the build directory: + cp -r "${WORKDIR}"/doc/doxygen/deal.II/images \ + "${BUILD_DIR}"/doc/doxygen/deal.II || die + # replace links: + sed -i \ + 's#"http://www.dealii.org/images/steps/developer/\(step-.*\)"#"images/\1"#g' \ + "${BUILD_DIR}"/doc/doxygen/deal.II/step_*.html || die "sed failed" + fi + cmake-utils_src_install + + # decompress the installed example sources: + use examples && docompress -x /usr/share/doc/${PF}/examples +} diff --git a/sci-libs/dealii/dealii-9999.ebuild b/sci-libs/dealii/dealii-9999.ebuild new file mode 100644 index 00000000000..0da4f8ea6ed --- /dev/null +++ b/sci-libs/dealii/dealii-9999.ebuild @@ -0,0 +1,145 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit cmake-utils eutils multilib + +# deal.II uses its own FindLAPACK.cmake file that calls into the system +# FindLAPACK.cmake module and does additional internal setup. Do not remove +# any of these modules: +CMAKE_REMOVE_MODULES_LIST="" + +DESCRIPTION="Solving partial differential equations with the finite element method" +HOMEPAGE="http://www.dealii.org/"; + +if [[ ${PV} = *9999* ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/dealii/dealii.git"; + SRC_URI="" + KEYWORDS="" +else + MY_PV="${PV//0_rc/rc}" + MY_P="${PN}-${MY_PV}" + SRC_URI="https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${MY_P}.tar.gz -> ${P}.tar.gz + doc? ( + https://github.com/${PN}/${PN}/releases/download/v${MY_PV}/${MY_P}-offline_documentation.tar.gz + -> ${P}-offline_documentation.tar.gz + )" + KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + S="${WORKDIR}/${PN}-${MY_PV}" +fi + +LICENSE="LGPL-2.1+" +SLOT="0" +IUSE=" + adolc assimp arpack cpu_flags_x86_avx cpu_flags_x86_sse2 cuda +debug + doc +examples gmsh +gsl hdf5 +lapack metis mpi muparser nanoflann + opencascade netcdf p4est petsc scalapack slepc +sparse static-libs + sundials symengine +tbb trilinos +" + +# TODO: add slepc use flag once slepc is packaged for gentoo-science +REQUIRED_USE=" + p4est? ( mpi ) + slepc? ( petsc ) + trilinos? ( mpi )" + +RDEPEND="dev-libs/boost + app-arch/bzip2 + sys-libs/zlib + adolc? ( sci-libs/adolc ) + arpack? ( sci-libs/arpack[mpi=] ) + assimp? ( media-libs/assimp ) + cuda? ( dev-util/nvidia-cuda-sdk ) + gmsh? ( sci-libs/gmsh ) + gsl? ( sci-libs/gsl ) + hdf5? ( sci-libs/hdf5[mpi=] ) + lapack? ( virtual/lapack ) + metis? ( >=sci-libs/parmetis-4 ) + mpi? ( virtual/mpi ) + muparser? ( dev-cpp/muParser ) + nanoflann? ( sci-libs/nanoflann ) + netcdf? ( sci-libs/netcdf-cxx:0 ) + opencascade? ( sci-libs/opencascade:* ) + p4est? ( sci-libs/p4est[mpi] ) + petsc? ( sci-mathematics/petsc[mpi=] ) + scalapack? ( sci-libs/scalapack ) + slepc? ( sci-mathematics/slepc[mpi=] ) + sparse? ( sci-libs/umfpack ) + sundials? ( sci-libs/sundials ) + symengine? ( >=sci-libs/symengine-0.4:= ) + tbb? ( dev-cpp/tbb ) + trilinos? ( sci-libs/trilinos )" + +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen[dot] dev-lang/perl )" + +src_configure() { + # deal.II needs a custom build type: + local CMAKE_BUILD_TYPE=$(usex debug DebugRelease Release) + + local mycmakeargs=( + -DDEAL_II_PACKAGE_VERSION=9999 + -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF + -DDEAL_II_ALLOW_AUTODETECTION=OFF + -DDEAL_II_ALLOW_BUNDLED=OFF + -DDEAL_II_ALLOW_PLATFORM_INTROSPECTION=OFF + -DDEAL_II_COMPILE_EXAMPLES=OFF + -DDEAL_II_DOCHTML_RELDIR="share/doc/${P}/html" + -DDEAL_II_DOCREADME_RELDIR="share/doc/${P}" + -DDEAL_II_COMPILE_EXAMPLES=OFF + -DDEAL_II_EXAMPLES_RELDIR="share/doc/${P}/examples" + -DDEAL_II_LIBRARY_RELDIR="$(get_libdir)" + -DDEAL_II_SHARE_RELDIR="share/${PN}" + -DDEAL_II_WITH_ZLIB=ON + -DDEAL_II_WITH_ADOLC="$(usex adolc)" + -DDEAL_II_WITH_ASSIMP="$(usex assimp)" + -DDEAL_II_WITH_ARPACK="$(usex arpack)" + -DDEAL_II_HAVE_AVX="$(usex cpu_flags_x86_avx)" + -DDEAL_II_WITH_CUDA="$(usex cuda)" + -DDEAL_II_HAVE_SSE2="$(usex cpu_flags_x86_sse2)" + -DDEAL_II_COMPONENT_DOCUMENTATION="$(usex doc)" + -DDEAL_II_COMPONENT_EXAMPLES="$(usex examples)" + -DDEAL_II_WITH_GMSH="$(usex gmsh)" + -DDEAL_II_WITH_GSL="$(usex gsl)" + -DDEAL_II_WITH_HDF5="$(usex hdf5)" + -DDEAL_II_WITH_LAPACK="$(usex lapack)" + -DDEAL_II_WITH_METIS="$(usex metis)" + -DDEAL_II_WITH_MPI="$(usex mpi)" + -DDEAL_II_WITH_MUPARSER="$(usex muparser)" + -DDEAL_II_WITH_NANOFLANN="$(usex nanoflann)" + -DDEAL_II_WITH_NETCDF="$(usex netcdf)" + -DOPENCASCADE_DIR="${CASROOT}" + -DDEAL_II_WITH_OPENCASCADE="$(usex opencascade)" + -DDEAL_II_WITH_P4EST="$(usex p4est)" + -DDEAL_II_WITH_PETSC="$(usex petsc)" + -DDEAL_II_WITH_SCALAPACK="$(usex scalapack)" + -DDEAL_II_WITH_SLEPC="$(usex slepc)" + -DDEAL_II_WITH_SUNDIALS="$(usex sundials)" + -DDEAL_II_WITH_SYMENGINE="$(usex symengine)" + -DDEAL_II_WITH_UMFPACK="$(usex sparse)" + -DBUILD_SHARED_LIBS="$(usex !static-libs)" + -DDEAL_II_PREFER_STATIC_LIBS="$(usex static-libs)" + -DDEAL_II_WITH_THREADS="$(usex tbb)" + -DDEAL_II_WITH_TRILINOS="$(usex trilinos)" + ) + cmake-utils_src_configure +} + +src_install() { + if use doc && [[ ${PV} != *9999* ]]; then + # copy missing images to the build directory: + cp -r "${WORKDIR}"/doc/doxygen/deal.II/images \ + "${BUILD_DIR}"/doc/doxygen/deal.II || die + # replace links: + sed -i \ + 's#"http://www.dealii.org/images/steps/developer/\(step-.*\)"#"images/\1"#g' \ + "${BUILD_DIR}"/doc/doxygen/deal.II/step_*.html || die "sed failed" + fi + cmake-utils_src_install + + # decompress the installed example sources: + use examples && docompress -x /usr/share/doc/${PF}/examples +} diff --git a/sci-libs/dealii/metadata.xml b/sci-libs/dealii/metadata.xml new file mode 100644 index 00000000000..2a8319d140e --- /dev/null +++ b/sci-libs/dealii/metadata.xml @@ -0,0 +1,45 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>tam...@gentoo.org</email> + <name>Matthias Maier</name> + </maintainer> + <maintainer type="project"> + <email>s...@gentoo.org</email> + <name>Gentoo Science Project</name> + </maintainer> + <longdescription lang="en"> +deal.II is a C++ program library targeted at the computational solution +of partial differential equations using adaptive finite elements. It uses +state-of-the-art programming techniques to offer you a modern interface +to the complex data structures and algorithms required. +</longdescription> + <use> + <flag name="adolc">Adds support for ADOL-C (<pkg>sci-libs/adolc</pkg>)</flag> + <flag name="arpack">Adds support for ARPACK (<pkg>sci-libs/arpack</pkg>)</flag> + <flag name="debug"> +Build an additional debug library with extra debug codepaths, like asserts +and extra output. If you want to get meaningful backtraces see +<http://www.gentoo.org/proj/en/qa/backtraces.xml></flag> + <flag name="gmsh">Add support for gmsh (<pkg>sci-libs/gmsh</pkg>)</flag> + <flag name="metis">Add support for metis (<pkg>sci-libs/metis</pkg>)</flag> + <flag name="muparser">Add support for muparser (<pkg>dev-cpp/muParser</pkg>)</flag> + <flag name="nanoflann">Adds support for nanoflann (<pkg>sci-libs/nanoflann</pkg>)</flag> + <flag name="opencascade">Add support for opencascade (<pkg>sci-libs/opencascade</pkg>)</flag> + <flag name="p4est">Add support for p4est (<pkg>sci-mathematics/p4est</pkg>)</flag> + <flag name="petsc">Add support for petsc (<pkg>sci-mathematics/petsc</pkg>)</flag> + <flag name="scalapack">Add support for ScaLAPACK (<pkg>sci-libs/scalapack</pkg>)</flag> + <flag name="slepc">Add support for slepc (<pkg>sci-mathematics/slepc</pkg>)</flag> + <flag name="sparse">Add support for suitesparse (<pkg>sci-libs/suitesparse</pkg>)</flag> + <flag name="symengine">Add support for symengine (<pkg>sci-libs/symengine</pkg>)</flag> + <flag name="tbb">Add threading support with the help of the tbb library (<pkg>dev-cpp/tbb</pkg>)</flag> + <flag name="trilinos">Add support for trilinos (<pkg>sci-libs/trilinos</pkg>)</flag> + <flag name="assimp">Add support for assimp (<pkg>media-libs/assimp</pkg>)</flag> + <flag name="cuda">Add support for cuda assimp (<pkg>dev-util/nvidia-cuda-sdk</pkg>)</flag> + <flag name="sundials">Add support for sundials assimp (<pkg>sci-libs/sundials</pkg>)</flag> + </use> + <upstream> + <remote-id type="github">dealii/dealii</remote-id> + </upstream> +</pkgmetadata>
