jlec 14/08/15 08:50:34 Modified: metadata.xml ChangeLog Added: apbs-1.4.1.ebuild Log: sci-chemistry/apbs: Version BUmp (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.14 sci-chemistry/apbs/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/metadata.xml?rev=1.14&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/metadata.xml?rev=1.14&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/metadata.xml?r1=1.13&r2=1.14 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/metadata.xml,v retrieving revision 1.13 retrieving revision 1.14 diff -u -r1.13 -r1.14 --- metadata.xml 19 Feb 2013 15:42:15 -0000 1.13 +++ metadata.xml 15 Aug 2014 08:50:33 -0000 1.14 @@ -10,6 +10,7 @@ <use> <flag name="arpack">Include support for arpack libs</flag> <flag name="fetk">Include support for FeTK</flag> + <flag name="fast">APBS fast mode (experimental)</flag> <flag name="tools">Install optional tools</flag> </use> <longdescription> 1.64 sci-chemistry/apbs/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/ChangeLog?rev=1.64&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/ChangeLog?rev=1.64&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/ChangeLog?r1=1.63&r2=1.64 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v retrieving revision 1.63 retrieving revision 1.64 diff -u -r1.63 -r1.64 --- ChangeLog 2 May 2013 15:16:35 -0000 1.63 +++ ChangeLog 15 Aug 2014 08:50:33 -0000 1.64 @@ -1,6 +1,12 @@ # ChangeLog for sci-chemistry/apbs -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.63 2013/05/02 15:16:35 jlec Exp $ +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.64 2014/08/15 08:50:33 jlec Exp $ + +*apbs-1.4.1 (15 Aug 2014) + + 15 Aug 2014; Justin Lecher <[email protected]> +apbs-1.4.1.ebuild, + +files/apbs-1.4.1-multilib.patch, metadata.xml: + Version BUmp 02 May 2013; Justin Lecher <[email protected]> apbs-1.3-r3.ebuild: Fix obsolete macros in automake-1.13 1.1 sci-chemistry/apbs/apbs-1.4.1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/apbs-1.4.1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/apbs-1.4.1.ebuild?rev=1.1&content-type=text/plain Index: apbs-1.4.1.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.4.1.ebuild,v 1.1 2014/08/15 08:50:33 jlec Exp $ EAPI=5 PYTHON_COMPAT=( python2_7 ) inherit cmake-utils flag-o-matic multilib python-single-r1 toolchain-funcs GITHUB_REV="74fcb8676de69ed04ddab8976a8b05a6caaf4d65" DESCRIPTION="Evaluation of electrostatic properties of nanoscale biomolecular systems" HOMEPAGE="http://www.poissonboltzmann.org/apbs/"; #SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz" SRC_URI="https://github.com/Electrostatics/apbs-pdb2pqr/archive/${GITHUB_REV}.zip -> ${P}.zip" SLOT="0" LICENSE="BSD" KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" IUSE="debug doc examples fast +fetk mpi openmp python tools" REQUIRED_USE="mpi? ( !python )" RDEPEND=" dev-cpp/eigen:3 dev-libs/maloc[mpi=] virtual/blas sys-libs/readline fetk? ( sci-libs/fetk sci-libs/amd sci-libs/umfpack sci-libs/superlu ) mpi? ( virtual/mpi ) python? ( ${PYTHON_DEPS} ) " DEPEND="${DEPEND} virtual/pkgconfig doc? ( app-doc/doxygen ) " S="${WORKDIR}"/${PN}-pdb2pqr-${GITHUB_REV}/${PN} PATCHES=( "${FILESDIR}"/${P}-multilib.patch ) src_prepare() { cmake-utils_src_prepare append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3) sed \ -e "s:-lblas:$($(tc-getPKG_CONFIG) --libs blas):g" \ -i CMakeLists.txt || die } src_configure() { local mycmakeargs=( -DSYS_LIBPATHS="${EPREFIX}"/usr/$(get_libdir) -DLIBRARY_INSTALL_PATH=$(get_libdir) -DFETK_PATH="${EPREFIX}"/usr/ -DBUILD_SHARED_LIBS=ON -DENABLE_QUIT=OFF $(cmake-utils_use_build doc DOC) $(cmake-utils_use_build tools TOOLS) -DENABLE_BEM=OFF # ENABLE_BEM: Boundary element method using TABIPB $(cmake-utils_use_enable debug DEBUG) $(cmake-utils_use_enable debug VERBOSE_DEBUG) $(cmake-utils_use_enable fast FAST) $(cmake-utils_use_enable fetk FETK) $(cmake-utils_use_enable mpi MPI) $(cmake-utils_use_enable python PYTHON) # ENABLE_TINKER: Enable TINKER support $(cmake-utils_use_enable python PYTHON) # ENABLE_iAPBS: Enable iAPBS # MAX_MEMORY: Set the maximum memory (in MB) to be used for a job ) cmake-utils_src_configure } src_test() { cd tests || die "${PYTHON}" apbs_tester.py -l log || die grep -q 'FAILED' log && die "Tests failed" } src_install() { cmake-utils_src_install python_optimize "${ED}" }
