commit: bc44451d56ba7f057b2a476d23ebb6b32730c8ca Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sun Apr 12 07:57:22 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Apr 12 07:57:22 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bc44451d
sci-libs/nipype: revbump 1.1.1-r2 package supports newer prov Package-Manager: Portage-2.3.98, Repoman-2.3.22 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-libs/nipype/nipype-1.1.1-r2.ebuild | 69 ++++++++++++++++++++++++++++++++++ 1 file changed, 69 insertions(+) diff --git a/sci-libs/nipype/nipype-1.1.1-r2.ebuild b/sci-libs/nipype/nipype-1.1.1-r2.ebuild new file mode 100644 index 000000000..a83371092 --- /dev/null +++ b/sci-libs/nipype/nipype-1.1.1-r2.ebuild @@ -0,0 +1,69 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/" +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/prov[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( + dev-python/mock[${PYTHON_USEDEP}] + <=dev-python/pytest-4.6.9[${PYTHON_USEDEP}] + ${RDEPEND} + ) +" +# Dependency disabled as upstream test configuration which requires it fails +#dev-python/pytest-xdist[${PYTHON_USEDEP}] + +RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydot[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] +" + +src_prepare() { + sed -i\ + -e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\ + -e "/'pytest-xdist',$/d"\ + -e "/'prov==%s' % PROV_VERSION,/d"\ + nipype/info.py || die + sed -i\ + -e "s/prov==1\.5\.0/prov/g"\ + requirements.txt rtd_requirements.txt || die + default +} + +python_test() { + pytest -vv\ + || die + # Upstream test configuration fails + #-c nipype/pytest.ini\ + #--doctest-modules nipype\ + #--cov nipype\ + #--cov-config .coveragerc\ + #--cov-report xml:cov.xml\ +}