commit: f3a538b68e80b3fc42af81717f48a5cbfb283f45
Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Fri May 15 19:30:28 2020 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri May 15 19:30:47 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f3a538b6
sci-biology/SPAdes: version bump to 3.14.1
This is a bug-fix release, which includes:
- Fix for read filtering tool;
- Soft and hard-filtered transcripts are now copied to the output
folder in rnaSPAdes;
- Minor fix in biosyntheticSPAdes pipeline;
- Minor fix in metaplasmidSPAdes contig output;
- Several usability fixes in `spades.py';
- Other minor bug-fixes.
Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>
sci-biology/SPAdes/{SPAdes-3.14.0.ebuild => SPAdes-3.14.1.ebuild} | 6 +-----
1 file changed, 1 insertion(+), 5 deletions(-)
diff --git a/sci-biology/SPAdes/SPAdes-3.14.0.ebuild
b/sci-biology/SPAdes/SPAdes-3.14.1.ebuild
similarity index 87%
rename from sci-biology/SPAdes/SPAdes-3.14.0.ebuild
rename to sci-biology/SPAdes/SPAdes-3.14.1.ebuild
index d3c1e0a57..773ccf658 100644
--- a/sci-biology/SPAdes/SPAdes-3.14.0.ebuild
+++ b/sci-biology/SPAdes/SPAdes-3.14.1.ebuild
@@ -13,11 +13,7 @@ SRC_URI="
https://github.com/ablab/spades/releases/download/v${PV}/${P}.tar.gz
http://cab.spbu.ru/files/release${PV}/manual.html -> ${P}_manual.html
http://cab.spbu.ru/files/release${PV}/rnaspades_manual.html ->
${P}_rnaspades_manual.html
- http://cab.spbu.ru/files/release${PV}/truspades_manual.html ->
${P}_truspades_manual.html
- http://spades.bioinf.spbau.ru/release3.11.1/dipspades_manual.html ->
${P}_dipspades_manual.html"
-# DEPRECATED in 3.12.0: dipSPAdes pipeline for highly polymorphic diploid
genomes
-# (still present in the release but no longer supported)
-
+ http://cab.spbu.ru/files/release${PV}/truspades_manual.html ->
${P}_truspades_manual.html"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS=""
