commit: 35c53b263ca449cfa6602fc548d89f839eaae5ee Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> AuthorDate: Tue Jun 30 22:29:39 2020 +0000 Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> CommitDate: Tue Jun 30 22:43:36 2020 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=35c53b26
sci-chemistry/propka: Version bump Package-Manager: Portage-2.3.103, Repoman-2.3.23 Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org> sci-chemistry/propka/Manifest | 2 +- sci-chemistry/propka/metadata.xml | 12 +++++++---- ...opka-3.1_p140511.ebuild => propka-3.2.0.ebuild} | 23 ++++++++++++---------- 3 files changed, 22 insertions(+), 15 deletions(-) diff --git a/sci-chemistry/propka/Manifest b/sci-chemistry/propka/Manifest index 7e3748e1a98..4141de90904 100644 --- a/sci-chemistry/propka/Manifest +++ b/sci-chemistry/propka/Manifest @@ -1 +1 @@ -DIST propka-3.1_p140511.tar.xz 151284 BLAKE2B 16b3528fb9ac224632f99c665c98b2349e49af92479a0b1ec411a08196724c14ba35199c69280d9f1c7e6126a347eede70e229ebd76392d887fe8bef7aad9283 SHA512 c2938af41ed386e267cd045b14e34779889b3c206016d747b68c400f2c8b37bd50cc3b74d055d931476065ac6817a2dd2cb87d68de9911adfff1c8e34a667fc3 +DIST propka-3.2.0.tar.gz 73746 BLAKE2B f79e493d5a195b81dc5d11cc21b9ab16c8d1fa48f15f7e23e2b2936dfb8634fdb00c7838b8dbdb4a68726dab0f16e54522ad71d71b3273ac93c03a737ae06f04 SHA512 98f2240b28b33bab94cdbe9392062bb7f6b87e75b94c2af91e178f874a74d210601161ebc835c4d751b89d37b32348fdfb096e28cbf8e9237b3f472d3fb6b4fc diff --git a/sci-chemistry/propka/metadata.xml b/sci-chemistry/propka/metadata.xml index 8937bad0b17..6bfad85b400 100644 --- a/sci-chemistry/propka/metadata.xml +++ b/sci-chemistry/propka/metadata.xml @@ -1,8 +1,12 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> - <maintainer type="project"> - <email>sci-chemis...@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> + <maintainer type="project"> + <email>sci-chemis...@gentoo.org</email> + <name>Gentoo Chemistry Project</name> + </maintainer> + <upstream> + <remote-id type="pypi">propka</remote-id> + <remote-id type="github">jensengroup/propka</remote-id> + </upstream> </pkgmetadata> diff --git a/sci-chemistry/propka/propka-3.1_p140511.ebuild b/sci-chemistry/propka/propka-3.2.0.ebuild similarity index 58% rename from sci-chemistry/propka/propka-3.1_p140511.ebuild rename to sci-chemistry/propka/propka-3.2.0.ebuild index 4b90e9aeab9..b5dadd1825d 100644 --- a/sci-chemistry/propka/propka-3.1_p140511.ebuild +++ b/sci-chemistry/propka/propka-3.2.0.ebuild @@ -1,24 +1,28 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python3_{7,8} ) inherit distutils-r1 DESCRIPTION="pKa-value prediction of ionizable groups in protein and protein-ligand complexes" -HOMEPAGE="http://propka.ki.ku.dk/"; -SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"; +HOMEPAGE="https://github.com/jensengroup/propka"; +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" SLOT="0" -LICENSE="all-rights-reserved" +LICENSE="LGPL-2.1" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" +IUSE="test" -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" +RESTRICT="!test? ( test )" -RESTRICT="mirror bindist" +RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]" +BDEPEND="test? ( + ${RDEPEND} + dev-python/pandas[${PYTHON_USEDEP}] +)" python_prepare_all() { sed -e "/exclude/s:scripts:\', \'Tests:g" \ @@ -32,6 +36,5 @@ python_test() { } python_install_all() { - dosym ${PN}31 /usr/bin/${PN} distutils-r1_python_install_all }
