axs 14/08/27 16:23:19 Modified: ChangeLog Added: GBrowse-2.48-r1.ebuild Removed: GBrowse-2.48.ebuild Log: bumped EAPI to 5 to support dev-lang/perl upgrades (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
Revision Changes Path 1.7 sci-biology/GBrowse/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.7&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.7&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?r1=1.6&r2=1.7 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v retrieving revision 1.6 retrieving revision 1.7 diff -u -r1.6 -r1.7 --- ChangeLog 19 Jun 2013 03:40:48 -0000 1.6 +++ ChangeLog 27 Aug 2014 16:23:19 -0000 1.7 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/GBrowse -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.6 2013/06/19 03:40:48 bicatali Exp $ +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.7 2014/08/27 16:23:19 axs Exp $ + +*GBrowse-2.48-r1 (27 Aug 2014) + + 27 Aug 2014; Ian Stakenvicius (_AxS_) <a...@gentoo.org> + +GBrowse-2.48-r1.ebuild, -GBrowse-2.48.ebuild: + bumped EAPI to 5 to support dev-lang/perl upgrades 19 Jun 2013; Sébastien Fabbro <bicat...@gentoo.org> metadata.xml: herd is now sci-biology 1.1 sci-biology/GBrowse/GBrowse-2.48-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild?rev=1.1&content-type=text/plain Index: GBrowse-2.48-r1.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild,v 1.1 2014/08/27 16:23:19 axs Exp $ EAPI=5 MODULE_AUTHOR=LDS inherit perl-module webapp DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser" HOMEPAGE="http://gmod.org/wiki/GBrowse"; KEYWORDS="~amd64 ~x86" IUSE="-minimal mysql postgres +sqlite" SLOT="0" WEBAPP_MANUAL_SLOT="yes" CDEPEND="!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL )" # >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile DEPEND="virtual/perl-Module-Build dev-perl/Capture-Tiny ${CDEPEND}" RDEPEND="${CDEPEND}" PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch ) src_configure() { webapp_src_preinst # myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse" myconf="--conf=/etc/gbrowse2" myconf="${myconf} --htdocs=${MY_HTDOCSDIR}" myconf="${myconf} --cgibin=${MY_CGIBINDIR}" myconf="${myconf} --tmp=/var/tmp/gbrowse2" myconf="${myconf} --persistent=/var/db/gbrowse2" myconf="${myconf} --databases=/var/db/gbrowse2/databases" myconf="${myconf} --installconf=no" myconf="${myconf} --installetc=no" perl-module_src_configure } src_install() { dodir /var/tmp/gbrowse2 dodir /var/db/gbrowse2/sessions dodir /var/db/gbrowse2/userdata webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2 perl-module_src_install webapp_src_install }
