commit: b118528394ea931b4732e27b266bc38a5d1c0ff1 Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sun Sep 13 23:12:53 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Sep 13 23:12:53 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b1185283
sci-biology/gatk: updated license, copyright, and ebuild style Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/gatk/gatk-3.8.1.ebuild | 8 +++----- sci-biology/gatk/gatk-9999.ebuild | 13 +++++-------- 2 files changed, 8 insertions(+), 13 deletions(-) diff --git a/sci-biology/gatk/gatk-3.8.1.ebuild b/sci-biology/gatk/gatk-3.8.1.ebuild index f46c1d322..9ad24d86c 100644 --- a/sci-biology/gatk/gatk-3.8.1.ebuild +++ b/sci-biology/gatk/gatk-3.8.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -17,19 +17,17 @@ EGIT_COMMIT="41147a655594c2aae6e2cad8462bd1648570b32b" LICENSE="MIT" SLOT="0" -IUSE="" KEYWORDS="~amd64" # 608.21 MiB git download and 134MB "${W}"/.m2 download -COMMON_DEPS="" DEPEND=" >=virtual/jdk-1.6 dev-java/maven-bin:* || ( dev-java/netbeans-java ) dev-java/cofoja - ${COMMON_DEPS}" + " RDEPEND=" >=virtual/jre-1.6 >=sci-biology/SnpEff-2.0.5 - ${COMMON_DEPS}" + " #S="${WORKDIR}/${PN}-${MY_PV}" diff --git a/sci-biology/gatk/gatk-9999.ebuild b/sci-biology/gatk/gatk-9999.ebuild index fc9db8986..70d42cb0a 100644 --- a/sci-biology/gatk/gatk-9999.ebuild +++ b/sci-biology/gatk/gatk-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -14,16 +14,13 @@ EGIT_CLONE_TYPE="mirror" # building outside of git is not possible, # see https://github.com/broadinstitute/picard/issues/605 # -# +# # must run 'git clone https://github.com/broadinstitute/gatk.git gatk' # see https://github.com/broadinstitute/gatk/issues/4687 -LICENSE="BSD-3" # since gatk-4 +LICENSE="BSD" # since gatk-4 SLOT="0" -IUSE="" -KEYWORDS="" # 148.19 MB git download and 134MB "${W}"/.m2 download -COMMON_DEPS="" # gatk-4 needs java-1.8 DEPEND=" >=virtual/jdk-1.8 @@ -31,12 +28,12 @@ DEPEND=" >=dev-vcs/git-lfs-1.1.0 >=dev-java/maven-bin-3.1:* || ( dev-java/netbeans-java ) dev-java/cofoja - ${COMMON_DEPS}" + " RDEPEND=" >=virtual/jre-1.8 >=sci-biology/SnpEff-2.0.5 >=dev-lang/R-3.2.5 - ${COMMON_DEPS}" + " #S="${WORKDIR}/${PN}-${MY_PV}"