commit: a34f3a93dc9085b7ecb7a7bd7db671351243373c Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc> AuthorDate: Tue Sep 22 10:43:17 2020 +0000 Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc> CommitDate: Tue Sep 22 10:43:17 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a34f3a93
sci-biology/STAR: drop package present in ::gentoo Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc> sci-biology/STAR/STAR-9999.ebuild | 36 ------------------------------------ sci-biology/STAR/metadata.xml | 15 --------------- 2 files changed, 51 deletions(-) diff --git a/sci-biology/STAR/STAR-9999.ebuild b/sci-biology/STAR/STAR-9999.ebuild deleted file mode 100644 index 787583b66..000000000 --- a/sci-biology/STAR/STAR-9999.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit git-r3 toolchain-funcs - -DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" -HOMEPAGE="http://code.google.com/p/rna-star/"; -EGIT_REPO_URI="https://github.com/alexdobin/STAR.git"; -# http://rna-star.googlecode.com/files/STARmanual_2.3.0.1.pdf - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -# contains bundled version sci-biology/htslib-0.0.1 -DEPEND="" -RDEPEND="${DEPEND}" - -# contains bundled STAR-Fusion -src_prepare(){ - sed -e "s/= gcc/= $(tc-getCC)/;s/-O2/${CFLAGS}/g" -i source/htslib/Makefile || die - sed -e "s/-O3/${CFLAGS}/g" -i source/Makefile || die -} - -src_compile(){ - cd source || die - emake STAR -} - -src_install(){ - dobin source/STAR - dodoc doc/STARmanual.pdf -} diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml deleted file mode 100644 index 1f2f45f25..000000000 --- a/sci-biology/STAR/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>mmokr...@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">alexdobin/STAR</remote-id> - </upstream> -</pkgmetadata>
