commit: 39df6200aad813e9488a21850b8b7b954b521dbd Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sat Sep 26 09:40:59 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sat Sep 26 09:40:59 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=39df6200
sci-biology/biopieces: Removed package with deprecated dep Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/biopieces/biopieces-0.51.ebuild | 71 ----------------------------- sci-biology/biopieces/biopieces-9999.ebuild | 71 ----------------------------- sci-biology/biopieces/metadata.xml | 12 ----- 3 files changed, 154 deletions(-) diff --git a/sci-biology/biopieces/biopieces-0.51.ebuild b/sci-biology/biopieces/biopieces-0.51.ebuild deleted file mode 100644 index 03a9d78cc..000000000 --- a/sci-biology/biopieces/biopieces-0.51.ebuild +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -USE_RUBY="ruby22 ruby23 ruby24" - -if [ "$PV" == "9999" ]; then - ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk"; - KEYWORDS="" - inherit subversion -else - SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh"; - KEYWORDS="" -fi - -inherit ruby-fakegem python-single-r1 - -DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank" -HOMEPAGE="http://code.google.com/p/biopieces"; -SRC_URI="" - -LICENSE="GPL-2" -SLOT="0" -IUSE="test" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -# Ruby terminal-table ? - -CDEPEND="${PYTHON_DEPS} - >=dev-lang/perl-5.8 - dev-perl/libwww-perl - dev-perl/Bit-Vector - dev-perl/Carp-Clan - dev-perl/Class-Inspector - dev-perl/DBD-mysql - dev-perl/DBI - dev-perl/HTML-Parser - dev-perl/Inline - dev-perl/Parse-RecDescent - dev-perl/SOAP-Lite - dev-perl/SVG - dev-perl/TermReadKey - dev-perl/URI - dev-perl/XML-Parser - virtual/perl-version - virtual/perl-DB_File - virtual/perl-Time-HiRes" - -DEPEND="${CDEPEND}" - -ruby_add_bdepend "dev-ruby/RubyInline" -ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray" - -# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict -# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict - -RDEPEND="${CDEPEND} - sci-biology/ncbi-tools - sci-biology/muscle - sci-biology/mummer - sci-biology/blat - sci-biology/bowtie - sci-biology/bwa - sci-biology/velvet - sci-biology/Ray - sci-biology/scan_for_matches - sci-biology/idba" diff --git a/sci-biology/biopieces/biopieces-9999.ebuild b/sci-biology/biopieces/biopieces-9999.ebuild deleted file mode 100644 index 03a9d78cc..000000000 --- a/sci-biology/biopieces/biopieces-9999.ebuild +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -USE_RUBY="ruby22 ruby23 ruby24" - -if [ "$PV" == "9999" ]; then - ESVN_REPO_URI="http://biopieces.googlecode.com/svn/trunk"; - KEYWORDS="" - inherit subversion -else - SRC_URI="http://biopieces.googlecode.com/files/biopieces_installer-${PV}.sh"; - KEYWORDS="" -fi - -inherit ruby-fakegem python-single-r1 - -DESCRIPTION="Trim adaptors, plot read lengths, qualities, map reads and submit to GenBank" -HOMEPAGE="http://code.google.com/p/biopieces"; -SRC_URI="" - -LICENSE="GPL-2" -SLOT="0" -IUSE="test" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -# Ruby terminal-table ? - -CDEPEND="${PYTHON_DEPS} - >=dev-lang/perl-5.8 - dev-perl/libwww-perl - dev-perl/Bit-Vector - dev-perl/Carp-Clan - dev-perl/Class-Inspector - dev-perl/DBD-mysql - dev-perl/DBI - dev-perl/HTML-Parser - dev-perl/Inline - dev-perl/Parse-RecDescent - dev-perl/SOAP-Lite - dev-perl/SVG - dev-perl/TermReadKey - dev-perl/URI - dev-perl/XML-Parser - virtual/perl-version - virtual/perl-DB_File - virtual/perl-Time-HiRes" - -DEPEND="${CDEPEND}" - -ruby_add_bdepend "dev-ruby/RubyInline" -ruby_add_rdepend "dev-ruby/gnuplot dev-ruby/narray" - -# sci-biology/vmatch # http://www.vmatch.de/ # fecth restrict -# sci-biology/usearch-bin # http://www.drive5.com/usearch/ # fecth restrict - -RDEPEND="${CDEPEND} - sci-biology/ncbi-tools - sci-biology/muscle - sci-biology/mummer - sci-biology/blat - sci-biology/bowtie - sci-biology/bwa - sci-biology/velvet - sci-biology/Ray - sci-biology/scan_for_matches - sci-biology/idba" diff --git a/sci-biology/biopieces/metadata.xml b/sci-biology/biopieces/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/biopieces/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>mmokr...@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
