commit: 7b77093ccf69b45396b77e47661ef62d9cabfdb9
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Sep 28 05:58:42 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Sep 28 05:58:42 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b77093c
sci-biology/biobambam: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/biobambam/biobambam-0.0.183.ebuild | 20 --------------------
sci-biology/biobambam/metadata.xml | 21 ---------------------
2 files changed, 41 deletions(-)
diff --git a/sci-biology/biobambam/biobambam-0.0.183.ebuild
b/sci-biology/biobambam/biobambam-0.0.183.ebuild
deleted file mode 100644
index 17a247d60..000000000
--- a/sci-biology/biobambam/biobambam-0.0.183.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-FULLVER=${PV}-release-20141208165400
-
-DESCRIPTION="Tools for bam file processing"
-HOMEPAGE="https://github.com/gt1/biobambam";
-SRC_URI="https://github.com/gt1/biobambam/archive/${FULLVER}.tar.gz";
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND="sci-libs/libmaus"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/${PN}-${FULLVER}
diff --git a/sci-biology/biobambam/metadata.xml
b/sci-biology/biobambam/metadata.xml
deleted file mode 100644
index 782a697ab..000000000
--- a/sci-biology/biobambam/metadata.xml
+++ /dev/null
@@ -1,21 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biol...@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <longdescription lang="en">
-This package contains some tools for processing BAM files including
-
-bamcollate2: reads BAM and writes BAM reordered such that alignment or
collated by query name
-bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked
using the BAM flags field
-bammaskflags: reads BAM and writes BAM while masking (removing) bits from the
flags column
-bamrecompress: reads BAM and writes BAM with a defined compression setting.
This tool is capable of multi-threading.
-bamsort: reads BAM and writes BAM resorted by coordinates or query name
-bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated
by query name
-</longdescription>
- <upstream>
- <remote-id type="github">gt1/biobambam</remote-id>
- </upstream>
-</pkgmetadata>
