commit: e44c9cbdd06cfb672155e0d6747d11e955d90dca Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sun Nov 1 18:35:59 2020 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sun Nov 1 18:35:59 2020 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e44c9cbd
sci-biology/gmap: Version bump to 2020.10.27 Bug: https://bugs.gentoo.org/708626 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/gmap/Manifest | 1 + .../gmap/files/gmap-2020.10.27-fno-common.patch | 22 ++++++++++++++++++++++ sci-biology/gmap/gmap-2020.10.27.ebuild | 17 +++++++++++++++++ 3 files changed, 40 insertions(+) diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest index a43611ecf58..226efe61e42 100644 --- a/sci-biology/gmap/Manifest +++ b/sci-biology/gmap/Manifest @@ -1 +1,2 @@ DIST gmap-gsnap-2015-12-31.v5.tar.gz 4169874 BLAKE2B bbbf53b72b5b7f97ba0eb05db7daa3d1f8a9330f32b96c2460a904a9f9f22078093f6fa585a12d4275e0943145ee78ef99348de4f19349dfa4e81d5f65572e1c SHA512 d42623c60c298d9d3009893432f3eef8cb764bf7cf26b42e6a95b27a468fffab20c8307597c4c8e1afdd61f35652246568c3162137ce59fc4850aaab1062bb48 +DIST gmap-gsnap-2020-10-27.tar.gz 4480720 BLAKE2B 9f8e8bfab19c079111d42ec466dd145385d35e3fde0a809e46776ed1b62b599664f12618803ea4475b6961a053423a8794d0b77eb0b308bdfa927b5bcaa7d49c SHA512 22e59adf404f5ef524b3cd472fb3124d03c8c55aa7946b9dc3901f5070339dc765f8f1ecc7e394b69a14bf80923f7a9db8d545e45328a346996b3288115a535b diff --git a/sci-biology/gmap/files/gmap-2020.10.27-fno-common.patch b/sci-biology/gmap/files/gmap-2020.10.27-fno-common.patch new file mode 100644 index 00000000000..cc225a78c26 --- /dev/null +++ b/sci-biology/gmap/files/gmap-2020.10.27-fno-common.patch @@ -0,0 +1,22 @@ +--- a/src/dynprog_end.c ++++ b/src/dynprog_end.c +@@ -109,7 +109,7 @@ + static Trieoffset_T *trieoffsets_max; + static Triecontent_T *triecontents_max; + +-bool homopolymerp; ++static bool homopolymerp; + + void + Dynprog_end_setup (Univcoord_T *splicesites_in, Splicetype_T *splicetypes_in, +--- a/src/dynprog_single.c ++++ b/src/dynprog_single.c +@@ -91,7 +91,7 @@ + + #define T Dynprog_T + +-bool homopolymerp; ++static bool homopolymerp; + + void + Dynprog_single_setup (bool homopolymerp_in) { diff --git a/sci-biology/gmap/gmap-2020.10.27.ebuild b/sci-biology/gmap/gmap-2020.10.27.ebuild new file mode 100644 index 00000000000..a90f0f63106 --- /dev/null +++ b/sci-biology/gmap/gmap-2020.10.27.ebuild @@ -0,0 +1,17 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +MY_PV="$(ver_rs 1- '-')" + +DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences" +HOMEPAGE="http://research-pub.gene.com/gmap/"; +SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"; + +LICENSE="gmap" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +S="${WORKDIR}/gmap-${MY_PV}" +PATCHES=( "${FILESDIR}"/${PN}-2020.10.27-fno-common.patch )
