commit: 121fb06db3b1f8c2990f875f269197f1c4d292de Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org> AuthorDate: Fri Sep 12 16:43:12 2014 +0000 Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org> CommitDate: Fri Sep 12 16:43:12 2014 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=121fb06d
drop sci-biology/jalview as dep <sci-chemistry/jmol-11.1 in missing --- sci-biology/jalview/ChangeLog | 15 -------- sci-biology/jalview/jalview-2.6.1.ebuild | 62 -------------------------------- sci-biology/jalview/metadata.xml | 9 ----- 3 files changed, 86 deletions(-) diff --git a/sci-biology/jalview/ChangeLog b/sci-biology/jalview/ChangeLog deleted file mode 100644 index 8150575..0000000 --- a/sci-biology/jalview/ChangeLog +++ /dev/null @@ -1,15 +0,0 @@ -# ChangeLog for sci-biology/jalview -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 13 Jul 2010; Andreas K. Huettel (dilfridge) <[email protected]> - jalview-2.4.ebuild: - Added comment about dependency: dev-java/vecmath is only in the java - overlay. Removed pmask for now. - - 10 Jul 2010; Andreas K. Huettel (dilfridge) <[email protected]> ChangeLog: - mask for removal since dependencies cannot be fulfilled (dev-java/vecmath) - - 10 Oct 2009; Andrey Kislyuk <[email protected]> ChangeLog: - New package, ebuild written by me - diff --git a/sci-biology/jalview/jalview-2.6.1.ebuild b/sci-biology/jalview/jalview-2.6.1.ebuild deleted file mode 100644 index 5f9ca5c..0000000 --- a/sci-biology/jalview/jalview-2.6.1.ebuild +++ /dev/null @@ -1,62 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -EANT_GENTOO_CLASSPATH="jmol,castor-1.0,log4j,commons-logging,commons-discovery,wsdl4j,xerces-2,saaj,vecmath,javahelp,sun-jaf" -JAVA_ANT_REWRITE_CLASSPATH="true" -EANT_BUILD_TARGET="distclean makedist" -JAVA_PKG_IUSE="source doc" - -inherit java-pkg-2 java-ant-2 eutils - -DESCRIPTION="A multiple DNA sequence alignment editor" -HOMEPAGE="http://www.jalview.org/"; -SRC_URI="http://www.jalview.org/source/jalview_2_6_1.tar.gz"; - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -COMMON_DEPS=">=sci-chemistry/jmol-11.0.2 <sci-chemistry/jmol-11.1 - dev-java/castor:1.0 - dev-java/log4j" -DEPEND=">=virtual/jdk-1.5 - ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.5 - dev-java/commons-discovery - dev-java/commons-logging - dev-java/saaj - dev-java/xerces - dev-java/wsdl4j - dev-java/vecmath - dev-java/javahelp - dev-java/sun-jaf - dev-java/sun-javamail - ${COMMON_DEPS}" - -# Note: dev-java/vecmath is in the java overlay. - -S="${WORKDIR}/${PN}" - -java_prepare() { - perl -i -ne'print unless /<jalopy/../<\/jalopy>/ or /<taskdef.+name="jalopy"/../<\/taskdef>/ or /<include name="jalview-jalopy.xml"/' build.xml - find -name '*.jar' | egrep -v '(vamsas|axis|jaxrpc|roxes-ant-tasks|regex|xml-apis)' | xargs rm -v -} - -src_install() { - java-pkg_dojar dist/*.jar - - MY_CP="" - for i in $(cd dist; ls *.jar); do - MY_CP="${MY_CP}:${ROOT}usr/share/${PN}/lib/$i" - done - java-pkg_dolauncher jalview --main jalview.bin.Jalview \ - --java_args "-cp ${MY_CP}:$(java-config -p ${EANT_GENTOO_CLASSPATH})" - - use source && java-pkg_dosrc src -# use doc && java-pkg_dojavadoc something - no docs to be seen - dodoc README doc/* -} diff --git a/sci-biology/jalview/metadata.xml b/sci-biology/jalview/metadata.xml deleted file mode 100644 index 3302123..0000000 --- a/sci-biology/jalview/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer> - <email>[email protected]</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> -</pkgmetadata>
