commit: 76926ef29fca81c7d72833654c27f9dccc09358c Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Jan 2 13:35:22 2021 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Jan 3 06:25:30 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=76926ef2
sci-biology/deeptools: version bump, bump py targets, enable sphinx Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/deeptools/deeptools-2.5.0.ebuild | 30 ----------------------- sci-biology/deeptools/deeptools-3.5.0.ebuild | 36 ++++++++++++++++++++++++++++ sci-biology/deeptools/deeptools-9999.ebuild | 29 ---------------------- 3 files changed, 36 insertions(+), 59 deletions(-) diff --git a/sci-biology/deeptools/deeptools-2.5.0.ebuild b/sci-biology/deeptools/deeptools-2.5.0.ebuild deleted file mode 100644 index e57fe3313..000000000 --- a/sci-biology/deeptools/deeptools-2.5.0.ebuild +++ /dev/null @@ -1,30 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python2_7 python3_5 ) - -inherit distutils-r1 - -[[ "$PV" == "9999" ]] && inherit git-r3 - -DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" -HOMEPAGE="https://github.com/fidelram/deepTools"; -if [[ "$PV" == "9999" ]]; then - EGIT_REPO_URI="https://github.com/fidelram/deepTools"; -else - SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz" -fi - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64" - -DEPEND=">=dev-python/numpy-1.8.0 - >=dev-python/scipy-0.17.0 - >=dev-python/py2bit-0.1.0 - >=dev-python/pyBigWig-0.2.1 - >=sci-biology/pysam-0.8 - >=dev-python/matplotlib-1.4.0" -RDEPEND="${DEPEND}" diff --git a/sci-biology/deeptools/deeptools-3.5.0.ebuild b/sci-biology/deeptools/deeptools-3.5.0.ebuild new file mode 100644 index 000000000..f53a19bcb --- /dev/null +++ b/sci-biology/deeptools/deeptools-3.5.0.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7,8,9} ) + +inherit distutils-r1 + +DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" +HOMEPAGE="https://github.com/deeptools/deepTools"; +SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +# TODO: fix this +RESTRICT="test" + +RDEPEND=" + >=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}] + >=dev-python/numpy-1.9.0[${PYTHON_USEDEP}] + >=dev-python/numpydoc-0.5[${PYTHON_USEDEP}] + >=dev-python/scipy-0.17.0[${PYTHON_USEDEP}] + >=dev-python/plotly-2.0.0[${PYTHON_USEDEP}] + >=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}] + >=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}] + >=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}] + >=dev-python/matplotlib-3.1.0[${PYTHON_USEDEP}] +" + +S="${WORKDIR}/deepTools-${PV}" + +distutils_enable_sphinx docs dev-python/sphinx_rtd_theme dev-python/sphinx-argparse +distutils_enable_tests nose diff --git a/sci-biology/deeptools/deeptools-9999.ebuild b/sci-biology/deeptools/deeptools-9999.ebuild deleted file mode 100644 index 89a8bf763..000000000 --- a/sci-biology/deeptools/deeptools-9999.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python2_7 python3_5 ) - -inherit distutils-r1 - -[[ "$PV" == "9999" ]] && inherit git-r3 - -DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" -HOMEPAGE="https://github.com/fidelram/deepTools"; -if [[ "$PV" == "9999" ]]; then - EGIT_REPO_URI="https://github.com/fidelram/deepTools"; -else - SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz" -fi - -LICENSE="GPL-3" -SLOT="0" - -DEPEND=">=dev-python/numpy-1.8.0 - >=dev-python/scipy-0.17.0 - >=dev-python/py2bit-0.1.0 - >=dev-python/pyBigWig-0.2.1 - >=sci-biology/pysam-0.8 - >=dev-python/matplotlib-1.4.0" -RDEPEND="${DEPEND}"
