commit: feaaa59c1d2f9181bcd111cabbc841f89b9b3d41
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan 4 12:59:18 2021 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 5 06:07:59 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=feaaa59c
sci-biology/pysamstats: bump py targets, add keywords
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/pysamstats/pysamstats-1.1.2.ebuild | 31 +++++++++++++++-----------
1 file changed, 18 insertions(+), 13 deletions(-)
diff --git a/sci-biology/pysamstats/pysamstats-1.1.2.ebuild
b/sci-biology/pysamstats/pysamstats-1.1.2.ebuild
index 06bb7c69b..445ec2162 100644
--- a/sci-biology/pysamstats/pysamstats-1.1.2.ebuild
+++ b/sci-biology/pysamstats/pysamstats-1.1.2.ebuild
@@ -1,25 +1,30 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
-PYTHON_COMPAT=( python2_7 python3_4 )
+PYTHON_COMPAT=( python3_{7,8,9} )
inherit distutils-r1
DESCRIPTION="Calculate stats against genome positions from SAM/BAM/CRAM file"
HOMEPAGE="https://github.com/alimanfoo/pysamstats
https://pypi.python.org/pypi/pysamstats";
-SRC_URI="mirror://pypi/p/${PN}/${P}.tar.gz"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
-KEYWORDS="" # needs working pysam, see bug #645060
-IUSE=""
-
-DEPEND="
- dev-python/cython
- dev-python/numpy
- dev-python/pytables
- >=sci-biology/pysam-0.15.1"
-RDEPEND="${DEPEND}"
+KEYWORDS="~amd64 ~x86"
+
+# TODO: fix this
+# ModuleNotFoundError: No module named 'pysamstats.opt'
+# happens even with the --install option
+RESTRICT="test"
+
+BDEPEND="dev-python/cython[${PYTHON_USEDEP}]"
+RDEPEND="
+ dev-python/numpy[${PYTHON_USEDEP}]
+ sci-biology/pysam[${PYTHON_USEDEP}]
+"
+
+distutils_enable_tests pytest
