jlec 14/09/15 19:59:23 Modified: ChangeLog Added: vienna-rna-2.1.8.ebuild Log: sci-biology/vienna-rna: Version Bump, #522850 (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.54 sci-biology/vienna-rna/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.54&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.54&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.53&r2=1.54 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v retrieving revision 1.53 retrieving revision 1.54 diff -u -r1.53 -r1.54 --- ChangeLog 29 Aug 2014 16:54:27 -0000 1.53 +++ ChangeLog 15 Sep 2014 19:59:23 -0000 1.54 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/vienna-rna # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.53 2014/08/29 16:54:27 zlogene Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.54 2014/09/15 19:59:23 jlec Exp $ + +*vienna-rna-2.1.8 (15 Sep 2014) + + 15 Sep 2014; Justin Lecher <[email protected]> +vienna-rna-2.1.8.ebuild, + +files/vienna-rna-2.1.8-bindir.patch: + Version Bump, #522850 29 Aug 2014; Mikle Kolyada <[email protected]> -vienna-rna-1.8.5.ebuild, vienna-rna-2.1.1.ebuild: 1.1 sci-biology/vienna-rna/vienna-rna-2.1.8.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/vienna-rna-2.1.8.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/vienna-rna-2.1.8.ebuild?rev=1.1&content-type=text/plain Index: vienna-rna-2.1.8.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-2.1.8.ebuild,v 1.1 2014/09/15 19:59:23 jlec Exp $ EAPI=5 PYTHON_COMPAT=( python2_7 ) DISTUTILS_OPTIONAL=true AUTOTOOLS_AUTORECONF=true AUTOTOOLS_IN_SOURCE_BUILD=1 inherit autotools-utils distutils-r1 multilib perl-module toolchain-funcs DESCRIPTION="RNA secondary structure prediction and comparison" HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA/"; SRC_URI="http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${PV}.tar.gz"; SLOT="0" LICENSE="vienna-rna" KEYWORDS="~amd64 ~ppc ~x86" IUSE="doc openmp python static-libs" REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" DEPEND=" dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( ${PYTHON_DEPS} dev-lang/swig )" RDEPEND="${DEPEND}" S="${WORKDIR}/ViennaRNA-${PV}" PATCHES=( "${FILESDIR}"/${P}-bindir.patch "${FILESDIR}"/${PN}-2.1.1-prll.patch "${FILESDIR}"/${PN}-2.1.1-impl-decl.patch ) src_prepare() { sed -i 's/ getline/ v_getline/' Readseq/ureadseq.c || die sed -i 's/@PerlCmd@ Makefile.PL/& INSTALLDIRS=vendor/' interfaces/Perl/Makefile.am || die autotools-utils_src_prepare if use python; then cd interfaces/Python || die local PATCHES=() distutils-r1_src_prepare fi } src_configure() { local myeconfargs=( --with-cluster $(use_enable openmp) ) use doc || \ myeconfargs+=( --without-doc-pdf --without-doc-html --without-doc ) autotools-utils_src_configure sed \ -e "s:CC=gcc:CC=$(tc-getCC):" \ -e "s:^CFLAGS=:CFLAGS=${CFLAGS}:" \ -i Readseq/Makefile || die if use python; then cd interfaces/Python || die distutils-r1_src_configure fi } src_compile() { autotools-utils_src_compile autotools-utils_src_compile -C Readseq build CC=$(tc-getCC) # TODO: Add (optional?) support for the NCBI toolkit. if use python; then cd interfaces/Python || die emake RNA_wrap.c distutils-r1_src_compile fi } src_test() { autotools-utils_src_compile -C interfaces/Perl check use python && autotools-utils_src_compile -C interfaces/Python check autotools-utils_src_compile -C Readseq test } src_install() { autotools-utils_src_install if ! use static-libs; then rm -f "${ED}"/usr/$(get_libdir)/*.a || die fi newbin Readseq/readseq readseq-vienna dodoc Readseq/Readseq.help newdoc Readseq/Readme README.readseq newdoc Readseq/Formats Formats.readseq # remove perlocal.pod to avoid file collisions (see #240358) fixlocalpod || die "Failed to remove perlocal.pod" if use python; then cd interfaces/Python || die distutils-r1_src_install fi }
