commit: 1f7711be06bee47240197a28be83ae62d6811d8f Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sun Jan 10 12:25:47 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sun Jan 10 12:25:47 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1f7711be
sci-biology/NGSEPcore-bin: add version 4.0.3 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> .../NGSEPcore-bin/NGSEPcore-bin-4.0.3.ebuild | 36 ++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/sci-biology/NGSEPcore-bin/NGSEPcore-bin-4.0.3.ebuild b/sci-biology/NGSEPcore-bin/NGSEPcore-bin-4.0.3.ebuild new file mode 100644 index 000000000..8f51a8541 --- /dev/null +++ b/sci-biology/NGSEPcore-bin/NGSEPcore-bin-4.0.3.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit java-utils-2 + +DESCRIPTION="NGSEP (CNV and indel discovery)" +HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home + https://github.com/NGSEP/NGSEPcore"; +SRC_URI="https://sourceforge.net/projects/ngsep/files/Library/NGSEPcore_${PV}.jar + https://sourceforge.net/projects/ngsep/files/training/ManualNGSEP_v${PV}.pdf -> ${P}_UserManual.pdf + https://sourceforge.net/projects/ngsep/files/training/Tutorial.txt -> ${P}_Tutorial.txt + https://sourceforge.net/projects/ngsep/files/training/QuickStart.txt -> ${P}_QuickStart.txt" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RDEPEND=" + !sci-biology/NGSEPcore + >=virtual/jdk-1.8:*" +DEPEND="${RDEPEND}" + +S="${WORKDIR}" + +src_unpack(){ + return +} + +src_install(){ + java-pkg_dojar "${DISTDIR}"/*.jar + dodoc "${DISTDIR}"/${P}_UserManual.pdf \ + "${DISTDIR}"/${P}_Tutorial.txt \ + "${DISTDIR}"/${P}_QuickStart.txt +}
