commit: de9721d49c6afc097ae9e0b20a098a8f2edb811a Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sun Jan 10 12:37:39 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sun Jan 10 12:37:39 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=de9721d4
sci-biology/NGSEPplugins: obsolete, replaced by guifx need eclipse-sdk, which is not packaged in ::gentoo yet Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> .../NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild | 28 ----------------- sci-biology/NGSEPplugin-bin/metadata.xml | 15 --------- sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild | 36 ---------------------- sci-biology/NGSEPplugin/metadata.xml | 15 --------- 4 files changed, 94 deletions(-) diff --git a/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild b/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild deleted file mode 100644 index f2a452138..000000000 --- a/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="NGSEP with Eclipse Plugin (CNV and indel discovery)" -HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home - https://github.com/NGSEP/NGSEPplugin"; -SRC_URI="https://sourceforge.net/projects/ngsep/files/OnlyPlugin/NGSEPplugin_3.3.1.201903140636.jar"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - >=virtual/jdk-1.7:* - sci-biology/NGSEPcore-bin" -RDEPEND="${DEPEND} - >=virtual/jre-1.7:*" - -S="${WORKDIR}" - -src_install(){ - java-pkg_dojar "${DISTDIR}"/*.jar -} diff --git a/sci-biology/NGSEPplugin-bin/metadata.xml b/sci-biology/NGSEPplugin-bin/metadata.xml deleted file mode 100644 index 642261079..000000000 --- a/sci-biology/NGSEPplugin-bin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">ngsep</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild b/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild deleted file mode 100644 index 736121efb..000000000 --- a/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="NGSEP with Eclipse Plugin (CNV and indel discovery)" -HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home - https://github.com/NGSEP/NGSEPplugin"; -SRC_URI="https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPplugin_${PV}.tar.gz"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - >=virtual/jdk-1.7:* - dev-java/jcommon - dev-util/eclipse-sdk - dev-java/htsjdk - sci-biology/NGSEPcore" -RDEPEND="${DEPEND} - >=virtual/jre-1.7:*" - -S="${WORKDIR}/${PN}_${PV}" - -src_prepare(){ - rm -f lib/NGSEPcore_3.3.1.jar lib/SortSam.jar lib/jcommon-1.0.17.jar lib/xchart-2.4.2.jar || die - default -} - -src_install(){ - java-pkg_dojar *.jar -} diff --git a/sci-biology/NGSEPplugin/metadata.xml b/sci-biology/NGSEPplugin/metadata.xml deleted file mode 100644 index 642261079..000000000 --- a/sci-biology/NGSEPplugin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">ngsep</remote-id> - </upstream> -</pkgmetadata>
