commit: 6f048647049efc2c0cb87f7aed4bc5fcc5ce5c1a Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Tue Jan 19 11:52:46 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Tue Jan 19 11:52:46 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6f048647
sci-biology/mavid: remove pack, retired by upstream in 2003 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 1 - sci-biology/mavid/mavid-2.0.4.ebuild | 48 ------------------------------------ sci-biology/mavid/metadata.xml | 8 ------ 3 files changed, 57 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 58d0cd955..70da8bb30 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -81,4 +81,3 @@ sci-biology/lucy sci-biology/MagicViewer sci-biology/manatee-igs sci-biology/manatee-jcvi -sci-biology/mavid diff --git a/sci-biology/mavid/mavid-2.0.4.ebuild b/sci-biology/mavid/mavid-2.0.4.ebuild deleted file mode 100644 index c75e28111..000000000 --- a/sci-biology/mavid/mavid-2.0.4.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Multiple alignment of large DNA sequences" -HOMEPAGE="http://baboon.math.berkeley.edu/mavid/"; -SRC_URI="http://bio.math.berkeley.edu/mavid/download/mavid-package-${PV}.tar.gz"; - -LICENSE="mavid" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND=" - sci-biology/clustalw - sci-biology/fastdnaml" - -S="${WORKDIR}"/${PN}-package-${PV} - -src_prepare() { - sed \ - -e 's:OPT_CPP_OPTIONS =:OPT_CPP_OPTIONS ?=:g' \ - -e 's:DEBUG_CPP_OPTIONS =:DEBUG_CPP_OPTIONS ?=:g' \ - -i $(find -type f -name Makefile) || die -} - -src_compile() { - emake \ - CPP=$(tc-getCXX) \ - BASE_CPP_OPTIONS="${CXXFLAGS}" \ - DEBUG_CPP_OPTIONS="${CXXFLAGS}" \ - OPT_CPP_OPTIONS="${CXXFLAGS}" - -} - -src_install() { - local i - dobin mavid/{mavid,mavid.pl} - for i in checkfasta cut_alignment extract_seq extract_tree fasta2phylip phylip2fasta project_alignment randtree root_tree tree_dists; do - dobin utils/$i/$i - done - dodoc examples/* - newdoc mavid/README README.mavid -} diff --git a/sci-biology/mavid/metadata.xml b/sci-biology/mavid/metadata.xml deleted file mode 100644 index 8417d1580..000000000 --- a/sci-biology/mavid/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
