commit: 722e6f658b5754e0830b444c77c74127eb175f5d Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Tue Jan 19 14:55:48 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Tue Jan 19 14:55:48 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=722e6f65
sci-biology/cegma: discontinued upstream Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 1 - sci-biology/cegma/cegma-2.5.ebuild | 38 -------------------------------------- sci-biology/cegma/metadata.xml | 12 ------------ 3 files changed, 51 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 35bcedf56..b30e95d7a 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -45,4 +45,3 @@ sci-biology/BBmap sci-biology/beagle sci-biology/blue sci-biology/cd-hit-auxtools -sci-biology/cegma diff --git a/sci-biology/cegma/cegma-2.5.ebuild b/sci-biology/cegma/cegma-2.5.ebuild deleted file mode 100644 index 16e4fd3a7..000000000 --- a/sci-biology/cegma/cegma-2.5.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit perl-module eutils toolchain-funcs - -DESCRIPTION="Predict genes in a genome and use them for training to find all genes" -HOMEPAGE="http://korflab.ucdavis.edu/datasets/cegma"; -SRC_URI="http://korflab.ucdavis.edu/datasets/cegma/CEGMA_v${PV}.tar.gz"; - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=" - sci-biology/wise - sci-biology/geneid - sci-biology/ncbi-tools++" - # >=sci-biology/hmmer-3.0 -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/CEGMA_v${PV} - -src_install(){ - dobin bin/* - perl_set_version - insinto ${VENDOR_LIB} - doins lib/*.pm -} - -pkg_postinst(){ - ewarn "cegma needs >=sci-biology/hmmer-3.0 but sci-biology/wise uses sci-biology/hmmer-2.3" - ewarn "hmmer-3 is not backwards compatible and does not even have all its previous features" - ewarn "Therefore, we do not list hmmer in the list of DEPENDENCIES." -} diff --git a/sci-biology/cegma/metadata.xml b/sci-biology/cegma/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/cegma/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
