commit: a4a0ea124842f9a8f1b0bd200e7d7c4b0458cdbe
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 18 20:36:55 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Sep 18 20:36:55 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a4a0ea12
Merge remote-tracking branch 'github/master'
* github/master: (71 commits)
updated metadata.xml
updated metadata.xml
remove old
libcerf patch got merged upstream
clean up
fixed DESCRIPTION
fixed DESCRIPTION
clean up
fixed DESCRIPTION
fixed DESCRIPTION
fixed DESCRIPTION
remove blank line
fixed deps
clean up
clean up
remove whitespace
clean up
readded die on remake
remove last line
remove last line
...
app-admin/eselect/ChangeLog | 5 +
app-admin/eselect/Manifest | 1 +
...1.4.2-r100.ebuild => eselect-1.4.3-r100.ebuild} | 2 +-
app-vim/vim-gromacs/ChangeLog | 3 +
app-vim/vim-gromacs/vim-gromacs-9999.ebuild | 1 -
dev-cpp/eigen/eigen-9999.ebuild | 8 +-
dev-ml/zarith/ChangeLog | 3 +
dev-ml/zarith/zarith-1.2.1.ebuild | 18 +-
dev-python/montage-wrapper/ChangeLog | 4 +
.../montage-wrapper/montage-wrapper-0.9.7.ebuild | 2 -
dev-util/numdiff/ChangeLog | 6 +
dev-util/numdiff/numdiff-5.8.1.ebuild | 12 +-
eclass/alternatives-2.eclass | 2 +-
profiles/ChangeLog | 6 +
profiles/package.mask | 10 -
sci-astronomy/pyAstroStack/ChangeLog | 3 +
.../pyAstroStack/pyAstroStack-0.3.0.ebuild | 2 +-
sci-biology/BBmap/BBmap-31.40.ebuild | 2 +-
sci-biology/BBmap/ChangeLog | 4 +-
sci-biology/BamView/BamView-1.2.11.ebuild | 3 +-
sci-biology/BamView/ChangeLog | 5 +-
sci-biology/{perlprimer => BamView}/metadata.xml | 3 +
sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 2 +-
sci-biology/CONTIGuator/ChangeLog | 6 +
sci-biology/IMAGE/ChangeLog | 4 +-
sci-biology/IMAGE/IMAGE-2.4.1.ebuild | 5 +-
sci-biology/MAKER/ChangeLog | 4 +-
sci-biology/MAKER/MAKER-9999.ebuild | 5 +-
sci-biology/MaSuRCA/ChangeLog | 4 +-
sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild | 8 +-
sci-biology/MagicViewer/ChangeLog | 6 +
sci-biology/MagicViewer/MagicViewer-1.2.1.ebuild | 9 +-
sci-biology/MeV/ChangeLog | 7 +
sci-biology/MeV/MeV-4.8.1.ebuild | 2 +-
sci-biology/{perlprimer => MeV}/metadata.xml | 3 +
sci-biology/RADtools/ChangeLog | 4 +
sci-biology/RADtools/RADtools-1.2.4.ebuild | 1 -
sci-biology/RADtools/RADtools-9999.ebuild | 1 -
sci-biology/VarScan/ChangeLog | 6 +
sci-biology/VarScan/VarScan-2.3.6.ebuild | 2 +-
sci-biology/bambino/ChangeLog | 4 +
sci-biology/bambino/bambino-1.02.ebuild | 4 +-
sci-biology/bambino/bambino-1.06.ebuild | 4 +-
sci-biology/eval/ChangeLog | 4 +-
sci-biology/eval/eval-2.2.8.ebuild | 4 +-
sci-biology/fastqc/ChangeLog | 3 +
sci-biology/fastqc/fastqc-0.10.1.ebuild | 2 +-
sci-biology/freebayes/ChangeLog | 4 +-
sci-biology/freebayes/freebayes-9999.ebuild | 2 +-
sci-biology/geneid/ChangeLog | 3 +
sci-biology/geneid/geneid-1.4.4.ebuild | 2 +-
sci-biology/genomeview-bin/ChangeLog | 4 +
.../genomeview-bin/genomeview-bin-2450.ebuild | 2 +-
sci-biology/manatee-jcvi/ChangeLog | 6 +-
sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild | 26 +-
sci-biology/mapview-bin/ChangeLog | 10 -
sci-biology/mapview-bin/Manifest | 2 -
sci-biology/mapview-bin/mapview-bin-3.4.1.ebuild | 34 -
sci-biology/mapview-bin/metadata.xml | 5 -
sci-biology/mgblast/ChangeLog | 4 +-
sci-biology/mgblast/mgblast-0.1.ebuild | 20 +-
sci-biology/ncbi-tools++/ChangeLog | 15 +-
sci-biology/ncbi-tools++/Manifest | 1 -
.../files/ncbi-tools++-12.0.0-as-needed.patch | 1867 --------------
.../files/ncbi-tools++-9.0.0-as-needed.patch | 1864 --------------
.../files/ncbi-tools++-9.0.0-conf-opts.patch | 213 --
.../ncbi-tools++-9.0.0-disable_test_compress.patch | 15 -
.../ncbi-tools++-9.0.0-fix-creaders-linking.patch | 10 -
.../ncbi-tools++-9.0.0-fix-order-of-libs.patch | 24 -
.../ncbi-tools++-9.0.0-fix-svn-URL-upstream.patch | 10 -
...-reference-to-GenBankReaders_Register_Id1.patch | 10 -
...ls++-9.0.0-remove-LZO-definition-upstream.patch | 10 -
sci-biology/ncbi-tools++/metadata.xml | 3 -
.../ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 3 +-
.../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 329 ---
sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 303 ---
sci-biology/ngsview/ChangeLog | 4 +-
sci-biology/ngsview/ngsview-0.91.ebuild | 4 +-
sci-biology/pileup/ChangeLog | 4 +-
sci-biology/pileup/pileup-0.6.ebuild | 4 +-
sci-biology/prot4EST/ChangeLog | 4 +-
sci-biology/prot4EST/prot4EST-3.1b.ebuild | 7 +-
sci-biology/samstat/ChangeLog | 3 +
sci-biology/samstat/samstat-20130708.ebuild | 2 +-
sci-biology/scaffold_builder/ChangeLog | 5 +-
.../scaffold_builder-20130403.ebuild | 5 +-
sci-biology/screed/ChangeLog | 4 +-
sci-biology/screed/screed-0.7.1.ebuild | 1 -
sci-biology/stacks/ChangeLog | 3 +
sci-biology/stacks/stacks-1.16.ebuild | 3 +-
sci-biology/tablet-bin/ChangeLog | 4 +
.../tablet-bin/tablet-bin-1.14.04.10.ebuild | 2 +-
sci-chemistry/chimera-bin/ChangeLog | 4 +
sci-chemistry/chimera-bin/Manifest | 6 -
sci-chemistry/chimera-bin/chimera-bin-1.6.2.ebuild | 94 -
sci-chemistry/chimera-bin/chimera-bin-1.8.1.ebuild | 94 -
sci-chemistry/chimera-bin/chimera-bin-1.8.ebuild | 94 -
sci-chemistry/chimera-bin/chimera-bin-1.9.ebuild | 1 -
sci-chemistry/cs-rosetta/ChangeLog | 5 +-
.../cs-rosetta/cs-rosetta-1.01.2009.1109.11.ebuild | 2 +-
sci-chemistry/freeon/ChangeLog | 3 +
sci-chemistry/freeon/metadata.xml | 3 -
sci-chemistry/mddnmr/ChangeLog | 7 +-
sci-chemistry/module2/ChangeLog | 8 +-
sci-chemistry/nmrpipe/ChangeLog | 8 +
sci-chemistry/nwchem/ChangeLog | 3 +
sci-chemistry/nwchem/nwchem-6.3_p2-r1.ebuild | 4 +-
sci-chemistry/openbabel-java/ChangeLog | 5 +-
.../openbabel-java/openbabel-java-9999.ebuild | 21 +-
sci-chemistry/openbabel-perl/ChangeLog | 5 +-
.../openbabel-perl/openbabel-perl-9999.ebuild | 11 +-
sci-chemistry/openbabel-python/ChangeLog | 5 +-
.../openbabel-python/openbabel-python-9999.ebuild | 15 +-
sci-chemistry/openbabel-ruby/ChangeLog | 5 +-
.../openbabel-ruby/openbabel-ruby-9999.ebuild | 15 +-
sci-chemistry/unio/ChangeLog | 9 +-
sci-chemistry/unio/Manifest | 1 -
sci-chemistry/unio/unio-2.0.2-r1.ebuild | 67 -
sci-chemistry/unio/unio-2.0.3.ebuild | 67 -
sci-libs/mkl/ChangeLog | 5 +
sci-libs/mkl/Manifest | 1 +
...-11.1.0.080-r1.ebuild => mkl-11.2.0.090.ebuild} | 4 +-
sci-libs/mlpack/ChangeLog | 3 +
sci-libs/mlpack/mlpack-1.0.8.ebuild | 2 +-
sci-libs/p4est/ChangeLog | 6 +
sci-libs/p4est/Manifest | 2 -
.../p4est/files/p4est-0.3.4.2-libtool-fix.patch | 59 -
.../p4est-0.3.5-add_missing_autotools_files.patch | 2535 --------------------
sci-libs/p4est/p4est-0.3.4.2.ebuild | 73 -
sci-libs/p4est/p4est-0.3.5.ebuild | 92 -
sci-libs/p4est/p4est-1.0.ebuild | 2 +-
sci-mathematics/alt-ergo/ChangeLog | 4 +-
sci-mathematics/alt-ergo/alt-ergo-0.95.2.ebuild | 14 +-
sci-mathematics/flocq/ChangeLog | 7 +-
sci-mathematics/flocq/flocq-2.3.0.ebuild | 3 +-
sci-mathematics/gappa/ChangeLog | 3 +
sci-mathematics/gappa/gappa-1.1.1.ebuild | 1 -
sci-mathematics/gappalib-coq/ChangeLog | 4 +-
.../gappalib-coq/gappalib-coq-1.0.0.ebuild | 1 -
sci-mathematics/giac/ChangeLog | 4 +-
sci-mathematics/giac/giac-1.1.0.ebuild | 23 +-
sci-mathematics/petsc/ChangeLog | 4 +-
sci-mathematics/petsc/petsc-3.4.2.ebuild | 2 +-
sci-mathematics/pff/ChangeLog | 4 +-
sci-mathematics/pff/pff-8.4.ebuild | 5 +-
sci-mathematics/why3/ChangeLog | 3 +
sci-mathematics/why3/why3-0.83.ebuild | 2 +-
sci-misc/elmer-gui/ChangeLog | 9 +-
sci-misc/elmer-gui/elmer-gui-9999.ebuild | 6 +-
sci-misc/elmer-gui/metadata.xml | 8 +
sci-physics/abinit/ChangeLog | 3 +
sci-physics/abinit/metadata.xml | 6 -
sci-physics/bigdft/ChangeLog | 4 +-
sci-physics/bigdft/bigdft-1.7.5.ebuild | 1 -
sci-visualization/gnuplot/ChangeLog | 3 +
sci-visualization/gnuplot/gnuplot-5.0.9999.ebuild | 1 +
156 files changed, 426 insertions(+), 8114 deletions(-)
