commit: 6bc33b33b7c919869ab6c5f03854f10b8b14a030 Author: Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr> AuthorDate: Sat Feb 20 20:25:45 2021 +0000 Commit: Jakov Smolić <jakov.smolic <AT> sartura <DOT> hr> CommitDate: Sat Feb 20 21:57:41 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6bc33b33
sci-biology/samstat: Port to EAPI 7 Closes: https://bugs.gentoo.org/755773 Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr> .../samstat/files/samstat-1.5.1-fno-common.patch | 31 ++++++++++++++++++++++ sci-biology/samstat/samstat-1.5.1.ebuild | 9 +++---- 2 files changed, 35 insertions(+), 5 deletions(-) diff --git a/sci-biology/samstat/files/samstat-1.5.1-fno-common.patch b/sci-biology/samstat/files/samstat-1.5.1-fno-common.patch new file mode 100644 index 000000000..d5bed9ed6 --- /dev/null +++ b/sci-biology/samstat/files/samstat-1.5.1-fno-common.patch @@ -0,0 +1,31 @@ +--- a/src/nuc_code.c ++++ b/src/nuc_code.c +@@ -29,6 +29,9 @@ + #include <stdlib.h> + #include "nuc_code.h" + ++unsigned int rev_nuc_code[5]; ++unsigned int nuc_code[256]; ++ + + /** \fn void init_nuc_code() + \brief Initializes nucleotide conversion arrays. +--- a/src/nuc_code.h ++++ b/src/nuc_code.h +@@ -32,14 +32,14 @@ + * + * + */ +-unsigned int nuc_code[256]; ++extern unsigned int nuc_code[256]; + + /** + * @brief Converts 0-5 nucleotides into printable ASCII to. + * + * + */ +-unsigned int rev_nuc_code[5]; ++extern unsigned int rev_nuc_code[5]; + + void init_nuc_code(void); + diff --git a/sci-biology/samstat/samstat-1.5.1.ebuild b/sci-biology/samstat/samstat-1.5.1.ebuild index cf409eeb0..5f1922467 100644 --- a/sci-biology/samstat/samstat-1.5.1.ebuild +++ b/sci-biology/samstat/samstat-1.5.1.ebuild @@ -1,9 +1,7 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 - -inherit eutils +EAPI=7 DESCRIPTION="Statistics of BAM/SAM files" HOMEPAGE="http://samstat.sourceforge.net"; # no https @@ -12,7 +10,8 @@ SRC_URI="https://sourceforge.net/projects/samstat/files/${P}.tar.gz"; LICENSE="GPL-3" SLOT="0" KEYWORDS="~amd64" -IUSE="" DEPEND="sci-biology/samtools:=" RDEPEND="${DEPEND}" + +PATCHES=( "${FILESDIR}"/${P}-fno-common.patch )
