commit: 37ef2ced836bb65bca36e6bd74d7c7adeca5d708 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Fri Mar 5 15:41:05 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Fri Mar 5 15:41:05 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=37ef2ced
sci-biology/RADtools: remove pack, unfetchable, upstream gone Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/InterMine/InterMine-9999.ebuild | 21 ------------------- sci-biology/RADtools/RADtools-1.2.4.ebuild | 32 ----------------------------- sci-biology/RADtools/RADtools-9999.ebuild | 29 -------------------------- sci-biology/RADtools/metadata.xml | 12 ----------- 4 files changed, 94 deletions(-) diff --git a/sci-biology/InterMine/InterMine-9999.ebuild b/sci-biology/InterMine/InterMine-9999.ebuild deleted file mode 100644 index 51f29cb4f..000000000 --- a/sci-biology/InterMine/InterMine-9999.ebuild +++ /dev/null @@ -1,21 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Biological data warehouse integrating complex data" -HOMEPAGE="https://github.com/intermine/intermine"; -if [ "$PV" == "9999" ]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/intermine/intermine"; - KEYWORDS="~amd64" -else - SRC_URI="" - KEYWORDS="" -fi - -LICENSE="LGPL-2.1+" -SLOT="0" - -DEPEND="" -RDEPEND="${DEPEND}" diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild deleted file mode 100644 index dc608b93b..000000000 --- a/sci-biology/RADtools/RADtools-1.2.4.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit eutils perl-module - -DESCRIPTION="Tools for processing RAD Sequencing Illumina reads" -HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"; -SRC_URI=" - https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_${PV}.tar.gz - https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=">=dev-lang/perl-5.10 - dev-perl/Parallel-ForkManager" -RDEPEND="${DEPEND}" - -S="${WORKDIR}" - -src_install() { - dobin RADMIDs RADmarkers RADpools RADtags - dodoc CHANGELOG RADmanual.pdf RADmanual.tex README - perl_set_version - insinto "${VENDOR_LIB}" - doins *.pm -} diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild deleted file mode 100644 index bdee24f78..000000000 --- a/sci-biology/RADtools/RADtools-9999.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit eutils perl-module git-r3 - -DESCRIPTION="Tools for processing RAD Sequencing Illumina reads" -HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"; -EGIT_REPO_URI="https://github.com/johnomics/RADtools.git"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - >=dev-lang/perl-5.10 - dev-perl/Parallel-ForkManager" -RDEPEND="${DEPEND}" - -src_install() { - dobin RADMIDs RADmarkers RADpools RADtags - dodoc CHANGELOG RADmanual.pdf RADmanual.tex README - perl_set_version - insinto "${VENDOR_LIB}" - doins *.pm -} diff --git a/sci-biology/RADtools/metadata.xml b/sci-biology/RADtools/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/RADtools/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
