commit: bc37c11b916f4db2d7135345be34e02ff828eb38 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sat Mar 6 15:36:41 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sat Mar 6 15:36:41 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bc37c11b
sci-biology/trans-abyss: update, fix install, EAPI bump Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild | 24 ---------------- sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild | 35 ++++++++++++++++++++++++ 2 files changed, 35 insertions(+), 24 deletions(-) diff --git a/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild b/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild deleted file mode 100644 index dbb2d668f..000000000 --- a/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Analyze and combine multiple assemblies from abyss" -HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"; -SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/${PV}/trans-ABySS-v${PV}_20130916.tar.gz"; - -# http://www.bcgsc.ca/platform/bioinfo/license/bcca_2010 -LICENSE="bcca_2010" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -# perl and python -DEPEND="" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/trans-ABySS-v"${PV}" - -# TODO -#src_install(){ -#} diff --git a/sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild b/sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild new file mode 100644 index 000000000..859783cc0 --- /dev/null +++ b/sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_7 ) + +inherit python-r1 + +DESCRIPTION="Analyze and combine multiple assemblies from abyss" +HOMEPAGE="https://www.bcgsc.ca/resources/software/trans-abyss"; +SRC_URI="https://github.com/bcgsc/transabyss/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +DEPEND="${PYTHON_DEPS} + dev-lang/perl + dev-python/python-igraph[${PYTHON_USEDEP}] + sci-biology/abyss + sci-biology/blat +" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/transabyss-${PV}" + +src_install() { + einstalldocs + python_foreach_impl python_domodule utilities + dobin transabyss + dobin transabyss-merge +}
