[gentoo-commits] proj/sci:master commit in: sci-biology/vcflib/

[Andrew Ammerlaan]

commit:     895437263b1776a28bc8cac3b2cc03b08759f028
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 16:00:49 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 16:00:49 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=89543726

sci-biology/vcflib: EAPI bump, version bump

still missing dep tabixpp so no keywords yet

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 .../{vcflib-9999.ebuild => vcflib-1.0.2.ebuild}    | 39 ++++++++++++----------
 1 file changed, 22 insertions(+), 17 deletions(-)

diff --git a/sci-biology/vcflib/vcflib-9999.ebuild 
b/sci-biology/vcflib/vcflib-1.0.2.ebuild
similarity index 69%
rename from sci-biology/vcflib/vcflib-9999.ebuild
rename to sci-biology/vcflib/vcflib-1.0.2.ebuild
index 91a14eca3..e8da0c6ab 100644
--- a/sci-biology/vcflib/vcflib-9999.ebuild
+++ b/sci-biology/vcflib/vcflib-1.0.2.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-inherit git-r3 toolchain-funcs
+inherit cmake toolchain-funcs
 
 DESCRIPTION="VCF/BED utils, Genotype Phenotype Association Toolkit (GPAT++)"
 HOMEPAGE="https://github.com/vcflib/vcflib";
-EGIT_REPO_URI="https://github.com/vcflib/vcflib.git";
+SRC_URI="https://github.com/vcflib/vcflib/releases/download/v${PV}/${P}-src.tar.gz";
 
 # vcflib is incorporated into several projects, such as freebayes
 
@@ -16,13 +16,18 @@ SLOT="0"
 KEYWORDS=""
 IUSE="openmp"
 
-DEPEND=""
+DEPEND="
+       sys-libs/zlib
+       sci-libs/htslib
+"
 RDEPEND="${DEPEND}"
 # contains bundled sci-biology/htslib ?
 # see also ./include for possible traces of other bundled sw
 
+S="${WORKDIR}/${PN}"
+
 src_prepare(){
-       default
+       cmake_src_prepare
        sed -e "s/^CXX = g++/CXX = $(tc-getCXX)/" -i Makefile || die
        sed -e "s/^CXXFLAGS = -O3/CXXFLAGS = ${CXXFLAGS}/" -i Makefile || die
        # openmp detection stolen from velvet-1.2.10.ebuild
@@ -39,15 +44,15 @@ src_prepare(){
 }
 
 src_compile(){
-       if use openmp ; then
-               emake openmp
-       else
-               emake
-       fi
-}
-
-src_install(){
-       dobin bin/*
-       dolib lib/* # install libvcflib.a
-       dodoc README.md
+       mycmakeargs=(
+               -DOPENMP="$(use_enable openmp)"
+               -DHTSLIB_LOCAL=NO
+       )
+       cmake_src_compile
 }
+#
+# src_install(){
+#      dobin bin/*
+#      dolib lib/* # install libvcflib.a
+#      dodoc README.md
+# }