jlec 14/10/02 08:01:05 Modified: ChangeLog Added: cufflinks-2.2.1-r1.ebuild Log: sci-biology/cufflinks: Drop debugging flags, fix compatibility with newer samtools, #524252 (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.9 sci-biology/cufflinks/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.9&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.9&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?r1=1.8&r2=1.9 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v retrieving revision 1.8 retrieving revision 1.9 diff -u -r1.8 -r1.9 --- ChangeLog 25 Sep 2014 16:11:26 -0000 1.8 +++ ChangeLog 2 Oct 2014 08:01:05 -0000 1.9 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/cufflinks # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.8 2014/09/25 16:11:26 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.9 2014/10/02 08:01:05 jlec Exp $ + +*cufflinks-2.2.1-r1 (02 Oct 2014) + + 02 Oct 2014; Justin Lecher <[email protected]> +cufflinks-2.2.1-r1.ebuild, + +files/cufflinks-2.2.1-flags.patch, +files/cufflinks-2.2.1-hts.patch: + Drop debugging flags, fix compatibility with newer samtools, #524252 *cufflinks-2.2.1 (25 Sep 2014) 1.1 sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild?rev=1.1&content-type=text/plain Index: cufflinks-2.2.1-r1.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild,v 1.1 2014/10/02 08:01:05 jlec Exp $ EAPI=5 AUTOTOOLS_AUTORECONF=true inherit autotools-utils flag-o-matic toolchain-funcs DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" HOMEPAGE="http://cufflinks.cbcb.umd.edu/"; SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz"; SLOT="0" LICENSE="Artistic" IUSE="debug" KEYWORDS="~amd64 ~x86" DEPEND=" || ( ( >=sci-biology/samtools-0.1.18 sci-libs/htslib ) <sci-biology/samtools-1 ) >=dev-libs/boost-1.47.0:= dev-cpp/eigen:3 " RDEPEND="${DEPEND}" PATCHES=( "${FILESDIR}"/${P}-hts.patch "${FILESDIR}"/${P}-flags.patch ) src_prepare() { append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3) autotools-utils_src_prepare } src_configure() { local myeconfargs=( --disable-optim --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" --with-bam="${EPREFIX}/usr/" $(use_enable debug) ) autotools-utils_src_configure }
