commit: 1030ab49c8ea531689c27860f6b82ea9d45a4685
Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 22 15:39:38 2021 +0000
Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Tue Jun 22 16:29:44 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1030ab49
dev-python/pandas: Bump to 1.2.5
Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
dev-python/pandas/Manifest | 1 +
dev-python/pandas/pandas-1.2.5.ebuild | 186 ++++++++++++++++++++++++++++++++++
2 files changed, 187 insertions(+)
diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index e728ccd7ef2..8b790820335 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1,2 +1,3 @@
DIST pandas-1.2.3.tar.gz 5466356 BLAKE2B
f392321915128769814b3a8b7673cd7b00c9c292f4cb8d8b2e8537f7cc513f92cb6b8ff74dffe3b167987e8fa387738264dbebfdf4019f9cd7afd4f78234212a
SHA512
3108424253aa143a85ef166091829bbd8c9b6446b516f37252742146d184f722e1fb8af5b4d04937362a298068019a91392e40c818126df6a7459bab7f3077cb
DIST pandas-1.2.4.tar.gz 5469105 BLAKE2B
7f39e3ca67f5997c0668b0c2e9792869963adcd0347a3983188a992794ad58ccba82105b4dc3315cc17d79104f7fea7a273c218967eb51b1ea1514e87aeebb66
SHA512
79e7a38b8edad52b70eb81ba821141b928c782009d59c50076e7d1e7c015078d333c0c80bda7ba720f4ccb221a0ba93a02885fe6a573567ee37ffae14ee9b2c3
+DIST pandas-1.2.5.tar.gz 5470907 BLAKE2B
2c5e0cb0849aa23ee8640528a3e29a579cc051543731e44c9be41fb989c85f1b2b18bc028e97c9b200f9894e4c3ac8af6a2100586e41f6d8a165a4c4679fd649
SHA512
c8bc2ca7ff8ca1a4877ccda67aaf49c103525d0f511636f93e1db3720d9a1717aacde0a5e3f107f8f620b59f0269d9e5c9515fbef46da4e87fca678d7acda990
diff --git a/dev-python/pandas/pandas-1.2.5.ebuild
b/dev-python/pandas/pandas-1.2.5.ebuild
new file mode 100644
index 00000000000..a55755019ca
--- /dev/null
+++ b/dev-python/pandas/pandas-1.2.5.ebuild
@@ -0,0 +1,186 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{8..9} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="https://pandas.pydata.org/";
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P/_/}.tar.gz"
+S="${WORKDIR}/${P/_/}"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~arm ~arm64 ~x86"
+IUSE="doc full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+ >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
+ >=dev-python/numexpr-2.1[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+OPTIONAL_DEPEND="
+ dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/blosc[${PYTHON_USEDEP}]
+ || (
+ dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ )
+ dev-python/jinja[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ || (
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/xlsxwriter[${PYTHON_USEDEP}]
+ )
+ >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
+ dev-python/statsmodels[${PYTHON_USEDEP}]
+ >=dev-python/xarray-0.10.8[${PYTHON_USEDEP}]
+ >=dev-python/sqlalchemy-0.8.1[${PYTHON_USEDEP}]
+ >=dev-python/xlrd-1.0.0[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
+ X? (
+ || (
+ dev-python/PyQt5[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+ )
+"
+COMMON_DEPEND="
+ >dev-python/numpy-1.15.4[${PYTHON_USEDEP}]
+ dev-python/python-dateutil[${PYTHON_USEDEP}]
+ dev-python/pytz[${PYTHON_USEDEP}]
+"
+DEPEND="${COMMON_DEPEND}
+ >=dev-python/cython-0.29.21[${PYTHON_USEDEP}]
+ doc? (
+ ${VIRTUALX_DEPEND}
+ app-text/pandoc
+ dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/html5lib[${PYTHON_USEDEP}]
+ dev-python/ipython[${PYTHON_USEDEP}]
+ dev-python/lxml[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/nbsphinx[${PYTHON_USEDEP}]
+ >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
+ >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+ >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
+ dev-python/pytz[${PYTHON_USEDEP}]
+ dev-python/rpy[${PYTHON_USEDEP}]
+ dev-python/sphinx[${PYTHON_USEDEP}]
+ dev-python/xlrd[${PYTHON_USEDEP}]
+ dev-python/xlwt[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ )
+ test? (
+ ${VIRTUALX_DEPEND}
+ ${RECOMMENDED_DEPEND}
+ ${OPTIONAL_DEPEND}
+ dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+ dev-python/hypothesis[${PYTHON_USEDEP}]
+ dev-python/nose[${PYTHON_USEDEP}]
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/pymysql[${PYTHON_USEDEP}]
+ >=dev-python/pytest-5.1[${PYTHON_USEDEP}]
+ dev-python/pytest-mock[${PYTHON_USEDEP}]
+ dev-python/pytest-xdist[${PYTHON_USEDEP}]
+ dev-python/psycopg:2[${PYTHON_USEDEP}]
+ dev-python/xlsxwriter[${PYTHON_USEDEP}]
+ x11-misc/xclip
+ x11-misc/xsel
+ )
+"
+# dev-python/statsmodels invokes a circular dep
+# hence rm from doc? ( ), again
+RDEPEND="${COMMON_DEPEND}
+ !minimal? ( ${RECOMMENDED_DEPEND} )
+ full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+python_prepare_all() {
+ # Prevent un-needed download during build
+ sed -e "/^ 'sphinx.ext.intersphinx',/d" \
+ -i doc/source/conf.py || die
+
+ # requires package installed
+ sed -e '/extra_compile_args =/s:"-Werror"::' \
+ -i setup.py || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_compile() {
+ distutils-r1_python_compile -j1
+}
+
+python_compile_all() {
+ # To build docs the need be located in $BUILD_DIR,
+ # else PYTHONPATH points to unusable modules.
+ if use doc; then
+ cd "${BUILD_DIR}"/lib || die
+ cp -ar "${S}"/doc . && cd doc || die
+ LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
+ fi
+}
+
+python_test() {
+ local deselect=(
+ # test for rounding errors, fails if we have better precision
+ # e.g. on amd64 with FMA or on arm64
+ # https://github.com/pandas-dev/pandas/issues/38921
+
pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+ # weird issue, doesn't seem very important
+
'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]'
+
+ # old psycopg2 API
+
pandas/tests/tools/test_to_datetime.py::TestToDatetime::test_to_datetime_tz_psycopg2
+ )
+
+ local -x LC_ALL=C.UTF-8
+ pushd "${BUILD_DIR}"/lib > /dev/null || die
+ "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+ PYTHONPATH=. virtx epytest pandas --skip-slow --skip-network \
+ ${deselect[@]/#/--deselect } -m "not single" \
+ -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")"
+ find . '(' -name .pytest_cache -o -name .hypothesis ')' \
+ -exec rm -r {} + || die
+ popd > /dev/null || die
+}
+
+python_install_all() {
+ if use doc; then
+ dodoc -r "${BUILD_DIR}"/lib/doc/build/html
+ einfo "An initial build of docs is absent of references to
statsmodels"
+ einfo "due to circular dependency. To have them included,
emerge"
+ einfo "statsmodels next and re-emerge pandas with USE doc"
+ fi
+
+ distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+ optfeature "accelerating certain types of NaN evaluations, using
specialized cython routines to achieve large speedups." dev-python/bottleneck
+ optfeature "accelerating certain numerical operations, using multiple
cores as well as smart chunking and caching to achieve large speedups"
">=dev-python/numexpr-2.1"
+ optfeature "needed for pandas.io.html.read_html"
dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml
+ optfeature "for msgpack compression using blosc" dev-python/blosc
+ optfeature "Template engine for conditional HTML formatting"
dev-python/jinja
+ optfeature "Plotting support" dev-python/matplotlib
+ optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-1.6.1"
dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+ optfeature "necessary for HDF5-based storage"
">=dev-python/pytables-3.2.1"
+ optfeature "R I/O support" dev-python/rpy
+ optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+ optfeature "SQL database support" ">=dev-python/sqlalchemy-0.8.1"
+ optfeature "miscellaneous statistical functions" dev-python/scipy
+ optfeature "necessary to use pandas.io.clipboard.read_clipboard
support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}
