commit: a4f2a634a69b0d1b7315af5238136b335acb558e Author: Bernd Waibel <waebbl-gentoo <AT> posteo <DOT> net> AuthorDate: Wed Jun 23 14:37:58 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Fri Jun 25 13:05:03 2021 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a4f2a634
sci-libs/vtk: solve RUNPATH issue - fix issue with NULL DT_RUNPATH when USE=mpi - remove obsolete docinto with USE=tcl - bug #727338 is not reproducible Bug: https://bugs.gentoo.org/727338 Closes: https://bugs.gentoo.org/778170 Closes: https://bugs.gentoo.org/795840 Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo <AT> posteo.net> Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-libs/vtk/vtk-8.2.0-r4.ebuild | 375 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 375 insertions(+) diff --git a/sci-libs/vtk/vtk-8.2.0-r4.ebuild b/sci-libs/vtk/vtk-8.2.0-r4.ebuild new file mode 100644 index 00000000000..5573bf1a4a7 --- /dev/null +++ b/sci-libs/vtk/vtk-8.2.0-r4.ebuild @@ -0,0 +1,375 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7,8,9} ) +WEBAPP_OPTIONAL=yes +WEBAPP_MANUAL_SLOT=yes + +# Short package version +SPV="$(ver_cut 1-2)" +inherit flag-o-matic java-pkg-opt-2 python-single-r1 qmake-utils toolchain-funcs cmake virtualx webapp + +DESCRIPTION="The Visualization Toolkit" +HOMEPAGE="https://www.vtk.org/"; +SRC_URI=" + https://www.vtk.org/files/release/${SPV}/VTK-${PV}.tar.gz + doc? ( https://www.vtk.org/files/release/${SPV}/vtkDocHtml-${PV}.tar.gz ) + examples? ( + https://www.vtk.org/files/release/${SPV}/VTKData-${PV}.tar.gz + https://www.vtk.org/files/release/${SPV}/VTKLargeData-${PV}.tar.gz + )" + +LICENSE="BSD LGPL-2" +SLOT="0" +KEYWORDS="~amd64 ~arm ~arm64 ~x86 ~amd64-linux ~x86-linux" +IUSE="all-modules aqua boost doc examples ffmpeg gdal imaging java json mpi + mysql odbc offscreen postgres python qt5 R rendering tbb tcl theora tk + video_cards_nvidia views web +X" + +REQUIRED_USE=" + all-modules? ( boost ffmpeg gdal mpi mysql odbc postgres python qt5 ) + java? ( qt5 ) + python? ( ${PYTHON_REQUIRED_USE} ) + tcl? ( rendering ) + examples? ( python ) + tk? ( tcl ) + web? ( python ) + ^^ ( X aqua offscreen )" + +RDEPEND=" + app-arch/lz4 + dev-cpp/eigen + dev-db/sqlite + dev-libs/double-conversion:0= + dev-libs/expat + dev-libs/jsoncpp:= + dev-libs/libxml2:2 + >=dev-libs/pugixml-1.11 + >=media-libs/freetype-2.5.4 + media-libs/glew:0= + >=media-libs/libharu-2.3.0-r2 + media-libs/libpng:0= + media-libs/libtheora + media-libs/mesa + media-libs/tiff:0 + sci-libs/exodusii + sci-libs/hdf5:= + sci-libs/netcdf:0= + sci-libs/netcdf-cxx:3 + sys-libs/zlib + virtual/jpeg:0 + virtual/opengl + x11-libs/libX11 + x11-libs/libXmu + x11-libs/libXt + all-modules? ( + !sci-libs/xdmf2 + <dev-libs/pegtl-3 + sci-libs/kissfft + ) + boost? ( dev-libs/boost:=[mpi?] ) + examples? ( + dev-qt/qtcore:5 + dev-qt/qtgui:5 + ) + ffmpeg? ( media-video/ffmpeg ) + gdal? ( sci-libs/gdal ) + java? ( >=virtual/jdk-1.8:* ) + mpi? ( + virtual/mpi[cxx,romio] + $(python_gen_cond_dep ' + python? ( dev-python/mpi4py[${PYTHON_MULTI_USEDEP}] ) + ') + ) + mysql? ( dev-db/mysql-connector-c ) + odbc? ( dev-db/unixODBC ) + offscreen? ( media-libs/mesa[osmesa] ) + postgres? ( dev-db/postgresql:= ) + python? ( + ${PYTHON_DEPS} + $(python_gen_cond_dep ' + dev-python/sip:5[${PYTHON_MULTI_USEDEP}] + ') + ) + qt5? ( + dev-qt/designer:5 + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qtopengl:5 + dev-qt/qtsql:5 + dev-qt/qtx11extras:5 + $(python_gen_cond_dep ' + python? ( dev-python/PyQt5[${PYTHON_MULTI_USEDEP}] ) + ') + ) + R? ( dev-lang/R ) + tbb? ( dev-cpp/tbb ) + tcl? ( dev-lang/tcl:0= ) + tk? ( dev-lang/tk:0= ) + video_cards_nvidia? ( x11-drivers/nvidia-drivers[tools,static-libs] ) + web? ( + ${WEBAPP_DEPEND} + $(python_gen_cond_dep ' + dev-python/autobahn[${PYTHON_MULTI_USEDEP}] + dev-python/constantly[${PYTHON_MULTI_USEDEP}] + dev-python/hyperlink[${PYTHON_MULTI_USEDEP}] + dev-python/incremental[${PYTHON_MULTI_USEDEP}] + dev-python/six[${PYTHON_MULTI_USEDEP}] + dev-python/twisted[${PYTHON_MULTI_USEDEP}] + dev-python/txaio[${PYTHON_MULTI_USEDEP}] + dev-python/zope-interface[${PYTHON_MULTI_USEDEP}] + ') + ) +" +DEPEND="${RDEPEND}" +BDEPEND=" + doc? ( app-doc/doxygen ) + mpi? ( app-admin/chrpath ) +" + +S="${WORKDIR}"/VTK-${PV} + +PATCHES=( + "${FILESDIR}"/${PN}-8.1.0-openmpi-4-compatibility.patch + "${FILESDIR}"/${P}-qt-5.15.patch # bug 726960 + "${FILESDIR}"/${P}-gcc-10.patch # bug 723374 + "${FILESDIR}"/${P}-fno-common.patch # bug 721048 + "${FILESDIR}"/${P}-py38.patch + "${FILESDIR}"/${P}-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch # bug #751088 + "${FILESDIR}"/${P}-pugixml.patch + "${FILESDIR}"/${P}-0001-fix-library-installation-dir-for-xdmf3.patch +) + +RESTRICT="test" + +pkg_setup() { + use java && java-pkg-opt-2_pkg_setup + use python && python-single-r1_pkg_setup + use web && webapp_pkg_setup +} + +src_prepare() { + cmake_src_prepare + + local x + # missing: VPIC freerange libproj4 mrmpi sqlite utf8 verdict xmdf2 xmdf3 zfp + for x in expat freetype hdf5 jpeg jsoncpp kissfft libharu libxml2 lz4 netcdf pugixml png tiff zlib; do + ebegin "Dropping bundled ${x}" + rm -r ThirdParty/${x}/vtk${x} || die + eend $? + done + + sed -i -e '/add_subdirectory(vtkpugixml)/d' ThirdParty/pugixml/CMakeLists.txt || die + sed -i -e '/vtk_target_export(vtkpugixml)/d' ThirdParty/pugixml/CMakeLists.txt || die + + # my_bool is no longer used in MySQL and MariaDB isn't supported in vtk-8 + sed -e 's/my_bool/bool/' -i IO/MySQL/vtkMySQL{Database,Query}.cxx || die + + if use doc; then + einfo "Removing .md5 files from documents." + rm -f "${WORKDIR}"/html/*.md5 || die "Failed to remove superfluous hashes" + sed -e "s|\${VTK_BINARY_DIR}/Utilities/Doxygen/doc|${WORKDIR}|" \ + -i Utilities/Doxygen/CMakeLists.txt || die + fi +} + +src_configure() { + # general configuration + local mycmakeargs=( + -Wno-dev + -DVTK_DIR="${S}" + -DVTK_INSTALL_LIBRARY_DIR=$(get_libdir) + -DVTK_INSTALL_PACKAGE_DIR="$(get_libdir)/cmake/${PN}-${SPV}" + -DVTK_INSTALL_DOC_DIR="${EPREFIX}/usr/share/doc/${PF}" + -DVTK_DATA_ROOT="${EPREFIX}/usr/share/${PN}/data" + -DVTK_CUSTOM_LIBRARY_SUFFIX="" + -DBUILD_SHARED_LIBS=ON + -DVTK_USE_SYSTEM_AUTOBAHN=ON + -DVTK_USE_SYSTEM_EXPAT=ON + -DVTK_USE_SYSTEM_FREETYPE=ON + -DVTK_USE_SYSTEM_FreeType=ON + # Use bundled gl2ps (bundled version is a patched version of 1.3.9. Post 1.3.9 versions should be compatible) + -DVTK_USE_SYSTEM_GL2PS=OFF + -DVTK_USE_SYSTEM_HDF5=ON + -DVTK_USE_SYSTEM_JPEG=ON + -DVTK_USE_SYSTEM_LIBPROJ=OFF + -DVTK_USE_SYSTEM_LIBXML2=ON + -DVTK_USE_SYSTEM_LibXml2=ON + -DVTK_USE_SYSTEM_NETCDF=ON + -DVTK_USE_SYSTEM_OGGTHEORA=ON + -DVTK_USE_SYSTEM_PUGIXML=ON + -DVTK_USE_SYSTEM_PNG=ON + -DVTK_USE_SYSTEM_TIFF=ON + -DVTK_USE_SYSTEM_TWISTED=ON + -DVTK_USE_SYSTEM_XDMF2=OFF + -DVTK_USE_SYSTEM_XDMF3=OFF + -DVTK_USE_SYSTEM_ZLIB=ON + -DVTK_USE_SYSTEM_ZOPE=ON + -DVTK_USE_SYSTEM_LIBRARIES=ON + # Use bundled diy2 (no gentoo package / upstream does not provide a Finddiy2.cmake or diy2Config.cmake / diy2-config.cmake) + -DVTK_USE_SYSTEM_DIY2=OFF + -DVTK_USE_GL2PS=ON + -DVTK_USE_LARGE_DATA=ON + -DVTK_USE_PARALLEL=ON + -DVTK_EXTRA_COMPILER_WARNINGS=ON + -DVTK_Group_StandAlone=ON + -DBUILD_DOCUMENTATION=$(usex doc) + -DBUILD_EXAMPLES=$(usex examples) + -DBUILD_VTK_BUILD_ALL_MODULES_FOR_TESTS=off + -DVTK_BUILD_ALL_MODULES=$(usex all-modules) + -DUSE_DOCUMENTATION_HTML_HELP=$(usex doc) + -DVTK_Group_Imaging=$(usex imaging) + -DVTK_Group_MPI=$(usex mpi) + -DVTK_Group_Rendering=$(usex rendering) + -DVTK_Group_Tk=$(usex tk) + -DVTK_Group_Views=$(usex views) + -DVTK_Group_Web=$(usex web) + -DVTK_SMP_IMPLEMENTATION_TYPE="$(usex tbb TBB Sequential)" + -DVTK_WWW_DIR="${EPREFIX}/${MY_HTDOCSDIR}" + -DVTK_WRAP_JAVA=$(usex java) + -DVTK_WRAP_PYTHON=$(usex python) + -DVTK_WRAP_PYTHON_SIP=$(usex python) + -DVTK_WRAP_TCL=$(usex tcl) + -DVTK_USE_BOOST=$(usex boost) + -DUSE_VTK_USE_BOOST=$(usex boost) + -DModule_vtkInfovisBoost=$(usex boost) + -DModule_vtkInfovisBoostGraphAlgorithms=$(usex boost) + -DVTK_USE_ODBC=$(usex odbc) + -DModule_vtkIOODBC=$(usex odbc) + -DVTK_USE_OFFSCREEN=$(usex offscreen) + -DVTK_OPENGL_HAS_OSMESA=$(usex offscreen) + -DVTK_USE_OGGTHEORA_ENCODER=$(usex theora) + -DVTK_USE_NVCONTROL=$(usex video_cards_nvidia) + -DModule_vtkFiltersStatisticsGnuR=$(usex R) + -DVTK_USE_X=$(usex X) + # IO + -DVTK_USE_FFMPEG_ENCODER=$(usex ffmpeg) + -DModule_vtkIOGDAL=$(usex gdal) + -DModule_vtkIOGeoJSON=$(usex json) + -DModule_vtkIOXdmf2=$(usex all-modules) + -DBUILD_TESTING=$(usex examples) + # Apple stuff, does it really work? + -DVTK_USE_COCOA=$(usex aqua) + ) + + if use all-modules; then + mycmakeargs+=( + -DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=ON + # we don't have a package for zfp yet + -DVTK_USE_SYSTEM_ZFP=OFF + ) + fi + + if use java; then + local javacargs=$(java-pkg_javac-args) + mycmakeargs+=( -DJAVAC_OPTIONS=${javacargs// /;} ) + fi + + if use mpi; then + mycmakeargs+=( -DVTK_USE_SYSTEM_MPI4PY=ON ) + fi + + if use python; then + mycmakeargs+=( + -DVTK_INSTALL_PYTHON_MODULES_DIR="$(python_get_sitedir)" + -DPYTHON_INCLUDE_DIR="$(python_get_includedir)" + -DPYTHON_LIBRARY="$(python_get_library_path)" + -DSIP_PYQT_DIR="${EPREFIX}/usr/share/sip" + -DSIP_INCLUDE_DIR="$(python_get_includedir)" + -DVTK_PYTHON_INCLUDE_DIR="$(python_get_includedir)" + -DVTK_PYTHON_LIBRARY="$(python_get_library_path)" + -DVTK_USE_SYSTEM_SIX=ON + ) + fi + + if use qt5; then + mycmakeargs+=( + -DVTK_USE_QVTK=ON + -DVTK_USE_QVTK_OPENGL=ON + -DVTK_USE_QVTK_QTOPENGL=ON + -DQT_WRAP_CPP=ON + -DQT_WRAP_UI=ON + -DVTK_INSTALL_QT_DIR="$(basename $(qt5_get_libdir))/qt5/plugins/designer" + -DDESIRED_QT_VERSION=5 + -DVTK_QT_VERSION=5 + -DQT_MOC_EXECUTABLE="$(qt5_get_bindir)/moc" + -DQT_UIC_EXECUTABLE="$(qt5_get_bindir)/uic" + -DQT_INCLUDE_DIR="${EPREFIX}/usr/include/qt5" + -DQT_QMAKE_EXECUTABLE="$(qt5_get_bindir)/qmake" + -DVTK_Group_Qt:BOOL=ON + -DCMAKE_DISABLE_FIND_PACKAGE_Qt5WebKitWidgets=ON + ) + fi + + if use R; then + mycmakeargs+=( + -DR_LIBRARY_BLAS=/usr/$(get_libdir)/R/lib/libR.so + -DR_LIBRARY_LAPACK=/usr/$(get_libdir)/R/lib/libR.so + ) + fi + + append-cppflags -D__STDC_CONSTANT_MACROS -D_UNICODE + + use java && export JAVA_HOME="${EPREFIX}/etc/java-config-2/current-system-vm" + + if use mpi; then + export CC=mpicc + export CXX=mpicxx + export FC=mpif90 + export F90=mpif90 + export F77=mpif77 + fi + + cmake_src_configure +} + +src_install() { + use web && webapp_src_preinst + + cmake_src_install + + use java && java-pkg_regjar "${ED}"/usr/$(get_libdir)/${PN}.jar + + # Stop web page images from being compressed + use doc && docompress -x /usr/share/doc/${PF}/doxygen + + # install examples + if use examples; then + einfo "Installing examples" + mv -v {E,e}xamples || die + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples + fi + + # with MPI, rpaths are not deleted properly + if use mpi; then + chrpath -d "${ED}"/usr/$(get_libdir)/*.so* || die + chrpath -d "${ED}"/usr/bin/* || die + if use python; then + chrpath -d "${ED}"/$(python_get_sitedir)/vtkmodules/*.so || die + fi + fi + + use python && python_optimize + + # environment + cat >> "${T}"/40${PN} <<- EOF || die + VTK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data + VTK_DIR=${EPREFIX}/usr/$(get_libdir)/${PN}-${SPV} + VTKHOME=${EPREFIX}/usr + EOF + doenvd "${T}"/40${PN} + + use web && webapp_src_install +} + +# webapp.eclass exports these but we want it optional #534036 +pkg_postinst() { + use web && webapp_pkg_postinst +} + +pkg_prerm() { + use web && webapp_pkg_prerm +}
