commit: 2175a5c65e6a29e243f25f7d1e237874d08020f0 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Tue Aug 31 09:28:05 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Tue Aug 31 09:28:05 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2175a5c6
sci-biology/mgblast: remove last-rited pack Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> sci-biology/mgblast/metadata.xml | 12 ------------ sci-biology/mgblast/mgblast-0.1.ebuild | 34 ---------------------------------- 2 files changed, 46 deletions(-) diff --git a/sci-biology/mgblast/metadata.xml b/sci-biology/mgblast/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/mgblast/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>mmokr...@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/mgblast/mgblast-0.1.ebuild b/sci-biology/mgblast/mgblast-0.1.ebuild deleted file mode 100644 index 9eb877c27..000000000 --- a/sci-biology/mgblast/mgblast-0.1.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="Customized version of megablast from TIGR Gene Indices project" -HOMEPAGE="https://web.archive.org/web/20140726030702/http://compbio.dfci.harvard.edu/tgi/software/"; -SRC_URI="ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/mgblast.tar.gz -> ${P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="" - -DEPEND="sci-biology/ncbi-tools" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${PN}" - -# mgblast needs old version of ncbi-tools unpacked and compiled during its own compilation -# from newer tools you need to include blfmtutl.h but the next error is no go for me: -# mgblast.c:2205: error: too few arguments to function ‘BXMLBuildOneQueryIteration’ - -# Quoting from mgblast/README: the present package was built and tested only with the release 20060507 - -src_prepare(){ - # mgblast cannot be compiled against newer ncbi-tools but let's try - mv makefile Makefile 2>/dev/null || true - sed -i -e 's#/usr/local/projects/tgi/ncbitoolkit/ncbi#/usr#' \ - -e's#NCBIDIR = /mylocal/src/ncbi#NCBIDIR = /usr#' \ - -e's#NCBI_INCDIR = .*#NCBI_INCDIR = /usr/include/ncbi#' \ - -e 's#NCBI_LIBDIR = .*#NCBI_LIBDIR = /usr/lib#' \ - -e "s#-I-#-iquote#" Makefile || die # a PATH to NCBI-TOOLKIT (/usr/lib) while NOT /usr/lib/ncbi-tools++ ! - default -}
